FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFT (Fumarate hydratase class II OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=fumC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 2
Query:    5 NGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 316
            +G+F+LNV  P+IA  LL S  LLG+         + G++  ++R+ ++L  + +LVT+LNP IGY+ AA +AK+A+KE   + + A +   LN  E   L+ P
Sbjct:  354 SGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESNLNPVELARLLDP 457          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFA (Fumarate hydratase class II OS=Xylella fastidiosa GN=fumC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 2
Query:    5 NGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 316
            +G+F+LNV  P+IA  LL S  LLG+         + G++  ++R+ ++L  + +LVT+LNP IGY+ AA +AK+A+KE   + + A +   LN  E   L+ P
Sbjct:  354 SGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESNLNPVELARLLDP 457          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_SERMA (Aspartate ammonia-lyase OS=Serratia marcescens GN=aspA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.772e-12
Identity = 34/110 (30.91%), Postives = 62/110 (56.36%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            G  +LNV +P+I   +  S+ +L +A  + ++ C+ GI AN+E     +  S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   E ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESIHILTNACYNLLEKCINGITANKEVCEHYVFNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVENLMHPA 466          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_SHIFL (Aspartate ammonia-lyase OS=Shigella flexneri GN=aspA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12
Identity = 33/110 (30.00%), Postives = 63/110 (57.27%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            G  +LNV +P+I   +  S+ +L +A  + ++ C+ GI AN+E     ++ S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   + ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_ECOLI (Aspartate ammonia-lyase OS=Escherichia coli (strain K12) GN=aspA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12
Identity = 33/110 (30.00%), Postives = 63/110 (57.27%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            G  +LNV +P+I   +  S+ +L +A  + ++ C+ GI AN+E     ++ S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   + ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_ECOL6 (Aspartate ammonia-lyase OS=Escherichia coli O6 GN=aspA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12
Identity = 33/110 (30.00%), Postives = 63/110 (57.27%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            G  +LNV +P+I   +  S+ +L +A  + ++ C+ GI AN+E     ++ S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   + ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_ECO57 (Aspartate ammonia-lyase OS=Escherichia coli O157:H7 GN=aspA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12
Identity = 33/110 (30.00%), Postives = 63/110 (57.27%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            G  +LNV +P+I   +  S+ +L +A  + ++ C+ GI AN+E     ++ S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   + ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STRAW (Fumarate hydratase class II OS=Streptomyces avermitilis GN=fumC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.948e-12
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLN 286
            G+FELNV  P+IA  +L S+RLL   S       V GI A+R+R  +    S  +VT LN  IGY+ AA VAKKA  E  T++   L+ G ++
Sbjct:  354 GNFELNVMLPVIAKNVLESVRLLAHVSRLLADRTVDGIVAHRDRAREYAESSPSVVTPLNKYIGYEEAAKVAKKALAERQTIRQVVLESGYVD 446          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_HAEIN (Aspartate ammonia-lyase OS=Haemophilus influenzae GN=aspA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.796e-12
Identity = 34/110 (30.91%), Postives = 60/110 (54.55%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            G  +LNV +P+I   +  S+ +L +A  +    CV GI  N+E     +  S+ +VT LNP IG+ N   V K   + G  +++  L+ G+L  E+ D+++  E ++ P+
Sbjct:  359 GQLQLNVMEPVIGQAMFESIDILTNACVNLRDKCVDGITVNKEICENYVFNSIGIVTYLNPFIGHHNGDLVGKICAQTGKGVREVVLEKGLLTEEQLDDILSVENLMNPT 468          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STRCO (Fumarate hydratase class II OS=Streptomyces coelicolor GN=fumC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.343e-11
Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAAL-----KLGVLNSEEFDNLVVPEKMIGP 334
            G+FELNV  P+IA  +L S+RLL + S       V GI A+ ER  +    S  +VT LN  +GY+ AA VAK+A  E  T++   L     + G L  E+ D  +   +M  P
Sbjct:  348 GNFELNVMLPVIAKNVLESVRLLANVSRLLADRTVDGIVAHPERAREYAESSPSVVTPLNKYLGYEEAAKVAKRALAERKTIRQTVLEGGYVERGDLTREQLDQALDVLRMTRP 461          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_XYLFT2.094e-1337.50Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_XYLFA2.094e-1337.50Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
ASPA_SERMA1.772e-1230.91Aspartate ammonia-lyase OS=Serratia marcescens GN=... [more]
ASPA_SHIFL3.023e-1230.00Aspartate ammonia-lyase OS=Shigella flexneri GN=as... [more]
ASPA_ECOLI3.023e-1230.00Aspartate ammonia-lyase OS=Escherichia coli (strai... [more]
ASPA_ECOL63.023e-1230.00Aspartate ammonia-lyase OS=Escherichia coli O6 GN=... [more]
ASPA_ECO573.023e-1230.00Aspartate ammonia-lyase OS=Escherichia coli O157:H... [more]
FUMC_STRAW3.948e-1243.01Fumarate hydratase class II OS=Streptomyces avermi... [more]
ASPA_HAEIN8.796e-1230.91Aspartate ammonia-lyase OS=Haemophilus influenzae ... [more]
FUMC_STRCO3.343e-1137.72Fumarate hydratase class II OS=Streptomyces coelic... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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