FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1012 contig Ccv1_Contig1012:11..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_CORGL (Aspartate ammonia-lyase OS=Corynebacterium glutamicum GN=aspA PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 32/109 (29.36%), Postives = 63/109 (57.80%), Query Frame = 2 
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            G  +LNV +P+I   L  SLR+LG+A+ +  + CV GI AN +     +  S+ ++T LNP +G+D    + K+A + G  +++  L+  +++ +  + ++  E ++ P
Sbjct:  408 GQLQLNVMEPVIGESLFQSLRILGNAAKTLREKCVVGITANADVCRAYVDNSIGIITYLNPFLGHDIGDQIGKEAAETGRPVRELILEKKLMDEKTLEAVLSKENLMHP 516
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ASPA_CORGL7.446e-1129.36Aspartate ammonia-lyase OS=Corynebacterium glutami... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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