FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1012 contig Ccv1_Contig1012:11..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BRUME (Fumarate hydratase class II OS=Brucella melitensis GN=fumC PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.105e-30
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S GHFELNVFKP+IA  +L S+RLL D   SF  +CV GI+ N  RI +LL  SLMLVT+L P IGYDNAA +AK AHK GTTL++ AL  G+++ E++D LV  E+MI P
Sbjct:  352 SQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAP 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_SALTY (Fumarate hydratase class II OS=Salmonella typhimurium GN=fumC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.443e-30
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            ++G+FELNV++PM+    L ++RLL D   SF K+C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+ LG L+ EEFD  V PE M+G
Sbjct:  352 ASGNFELNVYRPMVIHNFLQTVRLLADGMESFNKHCASGIEPNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDEEFDAWVRPELMVG 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BACCR (Fumarate hydratase class II OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=fumC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.885e-30
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 340
            S G+FELNVFKP+IA   L S  LL DA  SF  NC  GI+A+ E I++ ++ SLMLVT+LNP IGY+NAA +AK AHKEG TLK+AAL+ G+L  E+FD +V P+KMI P +
Sbjct:  350 SQGNFELNVFKPVIAYNFLQSAHLLADAIVSFNDNCAVGIEADEEVINENVNRSLMLVTALNPHIGYENAAKIAKHAHKEGLTLKEAALQSGLLTEEQFDEIVDPKKMIAPKE 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_SALTI (Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            ++G+FELNV++PM+    L ++RLL D  ASF ++C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+ LG L+  EFD  V PE M+G
Sbjct:  352 ASGNFELNVYRPMVIHNFLQTVRLLADGMASFNQHCASGIEPNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDAEFDAWVRPELMVG 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BACAN (Fumarate hydratase class II OS=Bacillus anthracis GN=fumC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 340
            S G+FELNVFKP+IA   L S  LL DA  SF  NC  GI+A+ E I + ++ SLMLVT+LNP IGY+NAA +AK AHKEG TLK+AAL+ G+L  E+F+ +V P+KMI P +
Sbjct:  350 SQGNFELNVFKPVIAYNFLQSAHLLADAIVSFNDNCAVGIEADEEIIKENVNRSLMLVTALNPHIGYENAAKIAKHAHKEGLTLKEAALQSGLLTEEQFNEIVDPKKMIAPKE 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_RHIME (Fumarate hydratase class II OS=Rhizobium meliloti GN=fumC PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            S GHFELNV+ P++A   L S++LL DA+ SF  NCV GI+A  + I   L  SLMLVT+L PKIGYDNAA +AK AHK GTTL++ A+  G +  EEFD +V PE MIGP+
Sbjct:  352 SQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETMIGPA 463          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_YERPE (Fumarate hydratase class II OS=Yersinia pestis GN=fumC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.596e-29
Identity = 63/110 (57.27%), Postives = 81/110 (73.64%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            ++G+FELNVF+P++    L S+RLL D    F ++C  GI+ NR+RI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK AA+ LG L   EFD  V PE M+G
Sbjct:  352 ASGNFELNVFRPLVIHNFLQSVRLLADGMRGFNEHCALGIEPNRDRITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAAMALGYLTDAEFDEWVRPEDMVG 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_CHRVO (Fumarate hydratase class II OS=Chromobacterium violaceum GN=fumC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.596e-29
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 328
            ++G+FELNVFKP+IA   L S RLL D   S  ++CV G++ANR RI++L+  SLMLVT+LNP IGYD AAA+AK AH+ GTTL++AAL LG L++E+FD  V PE M+
Sbjct:  353 ASGNFELNVFKPLIAHNFLQSARLLADGMDSLREHCVDGMEANRARIAELMARSLMLVTALNPHIGYDKAAAIAKHAHRHGTTLREAALALGHLSAEQFDAWVRPEDMV 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_AGRT5 (Fumarate hydratase class II OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=fumC PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.084e-29
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S GHFELNV+ PM+A   L S++LLGDA+ SF  NCV GI+A  + I K +  SLMLVT+LN K+GYD  A +AK AHK GTTL++ A+  G L +EEFD  V PE MIGP
Sbjct:  352 SQGHFELNVYNPMMAYNFLQSVQLLGDAAVSFTDNCVVGIEAREDNIRKGVENSLMLVTALNGKLGYDICAKIAKTAHKNGTTLREEAVGGGYLTNEEFDQYVRPENMIGP 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_MYXXD (Fumarate hydratase class II OS=Myxococcus xanthus (strain DK 1622) GN=fumC PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 6.063e-29
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            ++G+F+LNVFKP+IA  LL S RLL D   SF  +C  GI+ NR RI + L  SLMLVT+LNP IGYDNAA +AK AH++GTTLK+ A+ LG++  E+FD  V PE M G
Sbjct:  354 ASGNFQLNVFKPLIAHNLLQSCRLLADGMRSFRLHCAVGIEPNRPRIQENLERSLMLVTALNPHIGYDNAAKIAKTAHRDGTTLKETAVALGLVTPEQFDQWVRPEDMTG 463          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_BRUME1.105e-3058.56Fumarate hydratase class II OS=Brucella melitensis... [more]
FUMC_SALTY1.443e-3059.09Fumarate hydratase class II OS=Salmonella typhimur... [more]
FUMC_BACCR1.885e-3058.41Fumarate hydratase class II OS=Bacillus cereus (st... [more]
FUMC_SALTI5.484e-3058.18Fumarate hydratase class II OS=Salmonella typhi GN... [more]
FUMC_BACAN9.354e-3057.52Fumarate hydratase class II OS=Bacillus anthracis ... [more]
FUMC_RHIME1.222e-2957.14Fumarate hydratase class II OS=Rhizobium meliloti ... [more]
FUMC_YERPE1.596e-2957.27Fumarate hydratase class II OS=Yersinia pestis GN=... [more]
FUMC_CHRVO1.596e-2958.72Fumarate hydratase class II OS=Chromobacterium vio... [more]
FUMC_AGRT52.084e-2957.66Fumarate hydratase class II OS=Agrobacterium tumef... [more]
FUMC_MYXXD6.063e-2957.27Fumarate hydratase class II OS=Myxococcus xanthus ... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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