FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_PASMU (Fumarate hydratase class II OS=Pasteurella multocida GN=fumC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            + GHF+LNVFKP++A+  L S +LL DA  SF ++C  GI+ N  RI K L +SLMLVT+LN  IGY+NAA +AK AHK GTTLK+ A+ LG++ +E+FD  V PE M+G
Sbjct:  352 TQGHFQLNVFKPVMAANFLQSAQLLADACVSFDEHCAVGIEPNFPRIKKQLDDSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQFDEWVRPEDMVG 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_SYNY3 (Fumarate hydratase class II OS=Synechocystis sp. (strain PCC 6803) GN=fumC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.351e-28
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    LHSL LL DA ASF ++ V G+Q N  ++   L  SLMLVT+LNP IGYDNAA VAK A  +G TLK AA+ LG+L   +FD  VVPE+MI P
Sbjct:  353 SQGNFELNVFKPVIIHNFLHSLHLLSDACASFRQHLVVGLQVNESKVKDFLDTSLMLVTALNPHIGYDNAALVAKTAFAQGITLKQAAVDLGLLTPAQFDAWVVPEQMIAP 463          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_THEEB (Fumarate hydratase class II OS=Thermosynechococcus elongatus (strain BP-1) GN=fumC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.304e-28
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            S G+FELNV+KP+I   +L S+ LL DA+ SF  +C+ G++ NR++I   +  SLMLVT+LNP IGYD AAAVAKKA+ EG TLK+AA++LG L +EEFD  V  E M+G
Sbjct:  353 SQGNFELNVYKPLIIYNVLQSIALLSDAAQSFTDHCLVGVEPNRQQIQAYVERSLMLVTALNPHIGYDKAAAVAKKAYSEGKTLKEAAVELGYLTAEEFDRWVRLELMLG 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_CAMJE (Fumarate hydratase class II OS=Campylobacter jejuni GN=fumC PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.304e-28
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    L SL LL D+  SF  +C  GI+ NR +I   LH SLMLVT+LNP IGY+NAA VAK AHK+G +LK++ ++LG+++ E+F+  V P KMIGP
Sbjct:  351 SQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEPNRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESTMELGLVSEEDFNKFVDPTKMIGP 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_COXBU (Fumarate hydratase class II OS=Coxiella burnetii GN=fumC PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 62/109 (56.88%), Postives = 83/109 (76.15%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 328
            S G+FELNV+KP++A  L+ S+ LL DA  SF  +C  GI+ N+E+I+  L+ SLMLVT+LN  IGYD A+ +AKKA+KEGTTLK+AAL+LG L + EFD  V P+KM+
Sbjct:  349 SQGNFELNVYKPVMAYNLIQSIYLLSDACRSFNDHCAVGIKPNQEKINDYLNNSLMLVTALNQIIGYDKASEIAKKAYKEGTTLKEAALQLGYLTASEFDKAVDPKKMV 457          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BORPE (Fumarate hydratase class II OS=Bordetella pertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 325
            ++G+FELNVFKP++    L S+RLL D   SF K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  351 ASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BORPA (Fumarate hydratase class II OS=Bordetella parapertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 325
            ++G+FELNVFKP++    L S+RLL D   SF K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  351 ASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BORBR (Fumarate hydratase class II OS=Bordetella bronchiseptica GN=fumC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 325
            ++G+FELNVFKP++    L S+RLL D   SF K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  351 ASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BACSU (Fumarate hydratase class II OS=Bacillus subtilis GN=fumC PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    L S++LL D   SF   C  GI+ N+E I + L  SLMLVT+LNP IGY+NAA +AK AHKEG TLK+AALKL +L  E+F+ +V PE M+ P
Sbjct:  350 SQGNFELNVFKPVIIYNFLQSVQLLSDGMNSFHDKCAVGIEPNKETIQENLSNSLMLVTALNPHIGYENAAKIAKLAHKEGLTLKEAALKLELLTEEQFNEMVKPEDMVKP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_RHILO (Fumarate hydratase class II OS=Rhizobium loti GN=fumC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.133e-28
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S GHFELNV+ P++A   L S++LL DAS SF  NCV GI+A  + I   L  SLMLVT+L P IGYDNAA +AK AHK GTTL++ AL  G+++  ++D LV PE M  P
Sbjct:  354 SQGHFELNVYNPLMAYNFLQSVQLLSDASVSFTDNCVVGIEAREDNIKAALDRSLMLVTALAPTIGYDNAAKIAKTAHKNGTTLREEALATGLVSEVDYDRLVRPEDMTHP 464          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_PASMU1.034e-2855.45Fumarate hydratase class II OS=Pasteurella multoci... [more]
FUMC_SYNY31.351e-2858.56Fumarate hydratase class II OS=Synechocystis sp. (... [more]
FUMC_THEEB2.304e-2856.36Fumarate hydratase class II OS=Thermosynechococcus... [more]
FUMC_CAMJE2.304e-2855.86Fumarate hydratase class II OS=Campylobacter jejun... [more]
FUMC_COXBU3.009e-2856.88Fumarate hydratase class II OS=Coxiella burnetii G... [more]
FUMC_BORPE3.009e-2857.41Fumarate hydratase class II OS=Bordetella pertussi... [more]
FUMC_BORPA3.009e-2857.41Fumarate hydratase class II OS=Bordetella parapert... [more]
FUMC_BORBR3.009e-2857.41Fumarate hydratase class II OS=Bordetella bronchis... [more]
FUMC_BACSU3.009e-2856.76Fumarate hydratase class II OS=Bacillus subtilis G... [more]
FUMC_RHILO5.133e-2854.95Fumarate hydratase class II OS=Rhizobium loti GN=f... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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