FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_HAEDU (Fumarate hydratase class II OS=Haemophilus ducreyi GN=fumC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.133e-28
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            S GHF+LNVFKP++A+  L S +LL D   SF ++C  GI+ N  RI + L  SLMLVT+LN  IGY+NAA +AK AHK GTTLK+ A+ LG++ +E+FD  V P+ M+G
Sbjct:  352 SQGHFQLNVFKPVMAANFLQSAQLLADVCISFDEHCASGIEPNYPRIQQQLENSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQFDQWVRPQNMVG 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_NEIMA (Fumarate hydratase class II OS=Neisseria meningitidis serogroup A GN=fumC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 62/111 (55.86%), Postives = 82/111 (73.87%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            ++G+FELNV+ P+IA  LL S+RLLGDA  SF ++C  GI+   E+I   LH SLMLVT+LN KIGY+NAA VAK A+K   +L++ A++LG+L  EEFD LVVP  M+ P
Sbjct:  351 ASGNFELNVYMPVIAYNLLQSIRLLGDACNSFNEHCAVGIEPVPEKIDYFLHHSLMLVTALNRKIGYENAAKVAKTAYKNNKSLRETAVELGLLTGEEFDELVVPADMVHP 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_HAEIN (Fumarate hydratase class II OS=Haemophilus influenzae GN=fumC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            S GHF+LNVF P++ +  L S +LLGDA  SF ++C  GI+ N  RI + L  SLMLVT+LN  IGY+NAA +AK AHK GTTL++ A+ LG++++E+FD  V PE M+G
Sbjct:  352 SQGHFQLNVFNPVMIANFLQSAQLLGDACVSFDEHCAVGIEPNYPRIKQQLENSLMLVTALNTHIGYENAAKIAKTAHKNGTTLREEAINLGLVSAEDFDKWVRPEDMVG 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC2_PSEAE (Fumarate hydratase class II 2 OS=Pseudomonas aeruginosa GN=fumC2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 60/109 (55.05%), Postives = 80/109 (73.39%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 328
            S GH +LNVFKP+I   LL S+RLL D   +F K+CV G++ + +R++ LL   LMLVT+LNP IGYD AA +AKKA+ EGTTL+ AAL+LG L+  +FD  V PE+M+
Sbjct:  350 SQGHLQLNVFKPVIVYNLLESIRLLADGCRNFNKHCVAGLEPDAQRMADLLERGLMLVTALNPHIGYDKAAEIAKKAYAEGTTLRAAALQLGYLDEAQFDEWVRPEQML 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BACHD (Fumarate hydratase class II OS=Bacillus halodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.755e-28
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    L S  LL D   +F   C+ G++AN   I K L+ESLMLVT+LNP IGY+NAA +AKKAH EG TLK+AA++ G+L  EEF+ +V P KM+ P
Sbjct:  350 SQGNFELNVFKPVIIYNFLQSTTLLTDGLRTFHDKCLIGLEANETIIKKHLNESLMLVTALNPHIGYENAAKIAKKAHAEGLTLKEAAMQSGLLTEEEFEKMVDPAKMVHP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_OCEIH (Fumarate hydratase class II OS=Oceanobacillus iheyensis GN=fumC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.951e-27
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+IA   L S +LL D+  SF + C  GI+ N E+I K L++SLMLVT+LNP IGY+NAA +AKKA  + +TLK+ A++LG+L  E+FD  V PE+M  P
Sbjct:  350 SQGNFELNVFKPVIAYNFLQSSQLLADSIISFDERCAVGIEPNHEQIEKNLNDSLMLVTALNPHIGYENAAKIAKKAFADNSTLKETAVELGLLTEEQFDEYVNPEEMTYP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_WIGBR (Fumarate hydratase class II OS=Wigglesworthia glossinidia brevipalpis GN=fumC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.547e-27
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 2
Query:    5 NGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            +G+F+LNVF+PMI    L S+R+L D   SF K CV GI+ N +RI K L ESLMLVTSL P IGYD +A +AK AH E  TLK+A LKL  ++  +FD LV PE MIG
Sbjct:  353 SGNFQLNVFRPMIIYNFLQSVRILSDGIKSFNKKCVIGIKPNIKRIKKFLKESLMLVTSLTPHIGYDKSAKIAKLAHNENITLKEACLKLNYISESQFDILVRPENMIG 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_CAUCR (Fumarate hydratase class II OS=Caulobacter crescentus GN=fumC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.547e-27
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S GHFELNVF P++A   L S+RL+ DA+ SF  NCV GI+   + I K +  SLMLVT+LN K+GYD  A +AK AHK GTTL++ A+  G L +EEF+  V PEKMI P
Sbjct:  352 SQGHFELNVFNPVMAYNFLQSVRLVADAAISFTDNCVVGIEPRVDNIKKGVENSLMLVTALNGKLGYDACAKIAKTAHKNGTTLREEAVGGGYLTNEEFEQYVRPEKMISP 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_PSEPK (Fumarate hydratase class II OS=Pseudomonas putida (strain KT2440) GN=fumC-2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S GH +LNVFKP+I   LL S+ LL D   +F ++CV GI+ + E+++  L   LMLVT+LNP IGYD AA +AKKA+ EGTTL++AAL L  L +E+FD  V PE M+ P
Sbjct:  350 SQGHLQLNVFKPVIIHNLLQSIELLADGCRNFQQHCVAGIEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAKKAYSEGTTLREAALALKYLTNEQFDQWVRPENMLAP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAES (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fumC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    L S+ LL D   +F KNC  GIQ   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +   +F+  + PE M+ P
Sbjct:  350 SQGNFELNVFKPVIMHNTLQSIYLLADGMNTFNKNCAIGIQPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIESGYVTESQFEEWIKPEDMVDP 460          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_HAEDU5.133e-2853.64Fumarate hydratase class II OS=Haemophilus ducreyi... [more]
FUMC_NEIMA6.704e-2855.86Fumarate hydratase class II OS=Neisseria meningiti... [more]
FUMC_HAEIN6.704e-2853.64Fumarate hydratase class II OS=Haemophilus influen... [more]
FUMC2_PSEAE6.704e-2855.05Fumarate hydratase class II 2 OS=Pseudomonas aerug... [more]
FUMC_BACHD8.755e-2855.86Fumarate hydratase class II OS=Bacillus halodurans... [more]
FUMC_OCEIH1.951e-2754.95Fumarate hydratase class II OS=Oceanobacillus ihey... [more]
FUMC_WIGBR2.547e-2756.88Fumarate hydratase class II OS=Wigglesworthia glos... [more]
FUMC_CAUCR2.547e-2754.95Fumarate hydratase class II OS=Caulobacter crescen... [more]
FUMC_PSEPK4.345e-2753.15Fumarate hydratase class II OS=Pseudomonas putida ... [more]
FUMC_STAES9.680e-2752.25Fumarate hydratase class II OS=Staphylococcus epid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
back to top