FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAEQ (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fumC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    L S+ LL D   +F KNC  GIQ   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +   +F+  + PE M+ P
Sbjct:  350 SQGNFELNVFKPVIMHNTLQSIYLLADGMNTFNKNCAIGIQPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIESGYVTESQFEEWIKPEDMVDP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAHJ (Fumarate hydratase class II OS=Staphylococcus haemolyticus (strain JCSC1435) GN=fumC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.678e-26
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    L S+ LL D   +F  NC  GI+   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  350 SQGNFELNVFKPVILHNTLQSIYLLADGMQTFNDNCAVGIEPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQSGHVTEEQFEEWIKPEDMVDP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_PSESM (Fumarate hydratase class II OS=Pseudomonas syringae pv. tomato GN=fumC-1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.678e-26
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 328
            S GH +LNV+KP+I   +L S+RLL D  ++F ++CV G++ + E++++ L   LMLVT+LNP IGYD +A +AKKA+ EG TL++AAL LG L  EEFD  V P+KM+
Sbjct:  350 SQGHLQLNVYKPVIIHNVLQSIRLLADGCSNFNEHCVAGMEPDAEKMAEHLERGLMLVTALNPHIGYDKSAHIAKKAYTEGLTLREAALALGYLTDEEFDAWVRPDKML 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_NITEU (Fumarate hydratase class II OS=Nitrosomonas europaea GN=fumC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.804e-26
Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 325
            G+FELN  KP+I    L S RLL D + SF  +C  GI AN  RI + L ESLMLVT+LNP IGYD AA +AKKAH E  TLK+AA++LG + +E+FD  V P+KM
Sbjct:  354 GNFELNTMKPLIIHNFLQSTRLLADGAESFNTHCAAGITANTVRIKQHLQESLMLVTALNPHIGYDKAAEIAKKAHHEMLTLKEAAIRLGYVTAEQFDVWVDPQKM 459          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAAW (Fumarate hydratase class II OS=Staphylococcus aureus (strain MW2) GN=fumC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  350 SQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAAS (Fumarate hydratase class II OS=Staphylococcus aureus (strain MSSA476) GN=fumC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  350 SQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAAR (Fumarate hydratase class II OS=Staphylococcus aureus (strain MRSA252) GN=fumC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  350 SQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAAN (Fumarate hydratase class II OS=Staphylococcus aureus (strain N315) GN=fumC PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  350 SQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAAM (Fumarate hydratase class II OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fumC PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  350 SQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_STAAC (Fumarate hydratase class II OS=Staphylococcus aureus (strain COL) GN=fumC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  350 SQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_STAEQ9.680e-2752.25Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_STAHJ3.678e-2651.35Fumarate hydratase class II OS=Staphylococcus haem... [more]
FUMC_PSESM3.678e-2651.38Fumarate hydratase class II OS=Pseudomonas syringa... [more]
FUMC_NITEU4.804e-2656.60Fumarate hydratase class II OS=Nitrosomonas europa... [more]
FUMC_STAAW6.275e-2650.45Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAS6.275e-2650.45Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAR6.275e-2650.45Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAN6.275e-2650.45Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAM6.275e-2650.45Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAC6.275e-2650.45Fumarate hydratase class II OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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