FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1012 contig Ccv1_Contig1012:11..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_LISIN (Fumarate hydratase class II OS=Listeria innocua GN=fumC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.108e-22
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 325
            S G+FELNV+KP+I    L S+ LL D+  SF  +C+ G+ AN   I   +++SLMLVT+LNP IGY+ AA +AK A  E TTLK+AA+K G +  +EFD  + P KM
Sbjct:  345 SQGNFELNVYKPVIIFNFLESITLLSDSMRSFRIHCLEGLTANESVIEAKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKEFDLWIDPLKM 452          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_CHLPN (Fumarate hydratase class II OS=Chlamydia pneumoniae GN=fumC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.728e-21
Identity = 51/110 (46.36%), Postives = 72/110 (65.45%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            S G+FELNV KP+I    L S+ LL +   +F +  V+G++ N+ R+   ++ SLMLVT+L P +GYD  +  A KA  E  +LK+A L LG L+ +EFD LVVPE M+G
Sbjct:  349 SRGNFELNVMKPVIIYNFLQSVDLLSEGMRAFSEFFVKGLKVNKARLQDNINNSLMLVTALAPVLGYDKCSKAALKAFHESISLKEACLALGYLSEKEFDRLVVPENMVG 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_CHLCV (Fumarate hydratase class II OS=Chlamydophila caviae GN=fumC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.563e-21
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            S G+FELNV KP+I    L S+ +L     +F    V G++ N+ R+ + L  SLMLVT+L P +GYD  + +A KA  +   LK+A +++G L++EEFD LVVPE M+G
Sbjct:  349 SRGNFELNVMKPVIIYNFLQSVDILAGGMQAFADYFVSGLRVNKPRLKEYLDNSLMLVTALTPVLGYDKCSKMALKAFHDNINLKEACIQMGYLSAEEFDRLVVPESMVG 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_PROMA (Fumarate hydratase class II OS=Prochlorococcus marinus GN=fumC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.768e-20
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            S GH ++N +KP+IA  LL S+ LL  A  S     + GI+ N E+I   L  SLML+TSL P IGY+ A+ +A+ AH++  TLK+A   LG LN ++FD +V P+ M G
Sbjct:  353 SGGHLQMNSYKPLIAFNLLESIDLLSSACKSSRILMIEGIEPNLEKIQNSLQNSLMLITSLTPIIGYEKASKIAQCAHEKDITLKEATKLLGYLNEDDFDRIVNPQSMTG 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_BLOFL (Fumarate hydratase class II OS=Blochmannia floridanus GN=fumC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.768e-20
Identity = 49/111 (44.14%), Postives = 75/111 (67.57%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S+G  +LN ++P+I    L S+RLL D+  +F   C+ GI+   +RI KLL++SLMLVT+L+  IGYD +A +A+ A+  G TLK A+++ G +  ++FD+ V PE MI P
Sbjct:  336 SSGQLQLNTYRPLIIYNFLQSIRLLTDSIKNFHDYCIVGIRPKFKRIEKLLNKSLMLVTALSSHIGYDKSAQIAQTAYLNGITLKAASIQSGYVTEKQFDDWVCPENMIYP 446          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC2_BRAJA (Fumarate hydratase class II 2 OS=Bradyrhizobium japonicum GN=fumC2 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.955e-19
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            + G+ E+NV+KP+I   +  S+ +L D   +F    V G + NR++I + +  SLMLVT+L P IGYD A+ +A  A     TLK AALKLG +   EFD +V P KM+ P
Sbjct:  352 AGGYLEMNVYKPLIIHNIAQSVTILTDGCTNFRTFLVEGTEPNRKKIKEYVERSLMLVTALAPVIGYDKASRIAHYAMDNDLTLKSAALKLGFVTEPEFDRIVDPAKMVKP 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_CHLMU (Fumarate hydratase class II OS=Chlamydia muridarum GN=fumC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.553e-19
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            + G+FELNV KP+I    L S+ LL  A  SF    V G++ NR ++ + +  SLMLVT+L P +GYD  + +A KA  E  +LK+A + LG L+ +EFD  VVP  M+G
Sbjct:  349 TKGNFELNVMKPVIIYDFLQSVNLLSGAMRSFADYFVSGLKVNRGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEQEFDTHVVPGLMLG 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_CHLTR (Fumarate hydratase class II OS=Chlamydia trachomatis GN=fumC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            + G+FELNV KP+I    L S+ LL  A  SF    V G++ N+ ++ + +  SLMLVT+L P +GYD  + +A KA  E  +LK+A + LG L+ +EFD  V+P  M+G
Sbjct:  349 TKGNFELNVMKPVIIYDFLQSVNLLAGAMRSFADYFVCGLKVNKGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEKEFDEHVIPGLMVG 458          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_PROMP (Fumarate hydratase class II OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fumC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.289e-18
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 328
            ++G  ++N +KP+I   +L S++LL  A ++F    V GIQ N + I   L  SLMLVT+L PKIGY+ AA +A  A  E   LK+A +KLG L + EF++ +   KMI
Sbjct:  353 ASGTLQMNEYKPLIGFNILTSIKLLNHAISNFRLKLVEGIQPNPKTIKANLENSLMLVTALVPKIGYEKAAEIANLAFNESINLKEATIKLGYLTANEFEDAINTNKMI 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_HELPY (Aspartate ammonia-lyase OS=Helicobacter pylori GN=aspA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.401e-17
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            G  +LNVF+P+IA  L HS  +LG A  +    CV GI AN +     +  S+ +VT+LNP IGY+ +A +AK+A K   ++ D AL+  +L  E+ D++  PE M+ P
Sbjct:  352 GQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_LISIN1.108e-2250.00Fumarate hydratase class II OS=Listeria innocua GN... [more]
FUMC_CHLPN2.728e-2146.36Fumarate hydratase class II OS=Chlamydia pneumonia... [more]
FUMC_CHLCV3.563e-2144.55Fumarate hydratase class II OS=Chlamydophila cavia... [more]
FUMC_PROMA1.768e-2045.45Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC_BLOFL1.768e-2044.14Fumarate hydratase class II OS=Blochmannia florida... [more]
FUMC2_BRAJA1.955e-1943.24Fumarate hydratase class II 2 OS=Bradyrhizobium ja... [more]
FUMC_CHLMU2.553e-1944.55Fumarate hydratase class II OS=Chlamydia muridarum... [more]
FUMC_CHLTR1.267e-1842.73Fumarate hydratase class II OS=Chlamydia trachomat... [more]
FUMC_PROMP6.289e-1843.12Fumarate hydratase class II OS=Prochlorococcus mar... [more]
ASPA_HELPY1.401e-1740.37Aspartate ammonia-lyase OS=Helicobacter pylori GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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