FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_HELPJ (Aspartate ammonia-lyase OS=Helicobacter pylori J99 GN=aspA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.401e-17
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            G  +LNVF+P+IA  L HS  +LG A  +    CV GI AN +     +  S+ +VT+LNP IGY+ +A +AK+A K   ++ D AL+  +L  E+ D++  PE M+ P
Sbjct:  352 GQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_BACSU (Aspartate ammonia-lyase OS=Bacillus subtilis GN=ansB PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 39/109 (35.78%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            G  ELNV +P++   LL S+ ++ +   SF  NC++GI+AN +R+ + + +S  ++T++NP +GY+ AA +A++A   G +++D  L+  VL  EE D ++ P +M  P
Sbjct:  357 GQLELNVMEPVLVFNLLQSISIMNNGFRSFTDNCLKGIEANEKRMKQYVEKSAGVITAVNPHLGYEAAARIAREAIMTGQSVRDLCLQHDVLTEEELDIILNPYEMTKP 465          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    5 NGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 325
            +G+FELNV  P++A  LLHS++LL + S       +   + N+ ++S+ L  + +LVT+LNP IGY  AA +AK+A++EG  + D AL+   L+    + L+ PEK+
Sbjct:  347 SGNFELNVMLPLVADNLLHSIQLLANVSRLLADKAIASFKVNQGKLSEALARNPILVTALNPIIGYQKAAEIAKQAYREGRPIIDVALENTDLDRARLEVLLDPEKL 453          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_MYCTU (Fumarate hydratase class II OS=Mycobacterium tuberculosis GN=fumC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.004e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 283
            +NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  352 ANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_MYCBO (Fumarate hydratase class II OS=Mycobacterium bovis GN=fumC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.004e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 283
            +NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  352 ANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_PSEFL (Aspartate ammonia-lyase OS=Pseudomonas fluorescens GN=aspA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN  R  +L+  S+ LVT+LNP IGY+NA  +A+ A + G  + +   + G+L+    D+++ PE MI P
Sbjct:  363 GQLQLNVMEPLIAFKIFDSIRLLQRAMDMLREHCIVGITANEARCRELVEHSIGLVTALNPYIGYENATRIARIALESGRGVLELVREEGLLDDAMLDDILRPENMIAP 471          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 325
            + G  +LN++KP++A   L S  +L +ASA+F +  V  ++AN       +  S+ L T+LNP IGYD A+ VAK A KEG T+ +  ++ G L+  E  +++ PE M
Sbjct:  352 AEGQIDLNLYKPVLAHNFLQSADMLANASAAFGEKFVAKLEANEAACEAQVERSMALATALNPTIGYDKASEVAKAALKEGKTVTEVVVEKGYLSEAEAADVLDPEGM 459          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: ASPA_PSEAE (Aspartate ammonia-lyase OS=Pseudomonas aeruginosa GN=aspA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 41/109 (37.61%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    8 GHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN ER  +L+  S+ LVT+LNP IGY+N+  +AK A + G  + +   +  +L+     ++++PE MI P
Sbjct:  359 GQLQLNVMEPLIAYKIFDSIRLLQRAMDMLREHCITGITANVERCHELVEHSIGLVTALNPYIGYENSTRIAKTALESGRGVLELVREEKLLDEATLADILLPENMIAP 467          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_CORGL (Fumarate hydratase class II OS=Corynebacterium glutamicum GN=fumC PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEE 295
            + G FELNVF P++A  +L S RLL + S  F    V GI+ N   + +L   S  +VT LN  IGY+ AA VAK A  EG T++   + LG+++ E+
Sbjct:  352 TQGQFELNVFIPVMARNVLESARLLANTSRVFATRLVDGIEPNEAHMKELAESSPSIVTPLNSAIGYEAAAKVAKTALAEGKTIRQTVIDLGLVDGEK 449          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_COREF (Fumarate hydratase class II OS=Corynebacterium efficiens GN=fumC PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEE 295
            S G FELNVF P++A  +L S RLL + +  F    V GI  N E + +L   S  +VT LN  IGY+ AA VAK A  EG T++   + +G ++ E+
Sbjct:  352 SQGQFELNVFIPVMARNVLESARLLANTARVFATRLVDGIVPNEEHMKQLAESSPSIVTPLNSAIGYEAAAKVAKAALAEGKTIRQTVIDMGFVDGEK 449          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ASPA_HELPJ1.401e-1740.37Aspartate ammonia-lyase OS=Helicobacter pylori J99... [more]
ASPA_BACSU9.081e-1735.78Aspartate ammonia-lyase OS=Bacillus subtilis GN=an... [more]
FUMC1_PSEAE3.451e-1639.25Fumarate hydratase class II 1 OS=Pseudomonas aerug... [more]
FUMC_MYCTU1.004e-1543.62Fumarate hydratase class II OS=Mycobacterium tuber... [more]
FUMC_MYCBO1.004e-1543.62Fumarate hydratase class II OS=Mycobacterium bovis... [more]
ASPA_PSEFL3.815e-1538.53Aspartate ammonia-lyase OS=Pseudomonas fluorescens... [more]
FUMC_HALSA6.508e-1537.96Fumarate hydratase class II OS=Halobacterium salin... [more]
ASPA_PSEAE1.110e-1437.61Aspartate ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
FUMC_CORGL3.230e-1441.84Fumarate hydratase class II OS=Corynebacterium glu... [more]
FUMC_COREF5.510e-1441.84Fumarate hydratase class II OS=Corynebacterium eff... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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