FC932202

Overview
NameFC932202
Unique NameFC932202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQ 203
            G+  + G+TDT  P+RLGPKRA+KIR+ F L + +DVRK+V+RR V K GK+D  KAPKIQRL+TP+
Sbjct:  120 GDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRVVKSGKKDRLKAPKIQRLITPR 186          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 52/117 (44.44%), Postives = 65/117 (55.56%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRAS 353
            G+GE+ GLTD+V+P++LGPKRA+KIR+ F L K DDV K+VI    T       T APKIQRL+TP R+                 RD A  Y KLLA    EE   +   R+  AS
Sbjct:  117 GDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTIAPKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAKIARRRSSAS 233          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.518e-15
Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQD-YTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKR 326
            G+ E+PGLTD   P   GPKRA+ IR+ F L K +DVR FVIRR +    K+   +KAPKIQRLVTP  +                A + A +YAKL+A R  + KAKR
Sbjct:  117 GDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFVIRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQR-QQAKAKR 224          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMRK*TSRPAV 386
            GE +LPGLTDT  P+  GP+   +    +   K+DDVRK+V   T     K   +KAPKIQRLVTP  L                A+  A +Y KLLA R+ E++ KR E   ++ S +    S+P++
Sbjct:   74 GENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYV-NTTAEFTTKWKGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRLSA-ASKPSI 197          
The following BLAST results are available for this feature:
BLAST of FC932202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_LEIIN1.242e-1759.7040S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_CAEEL6.164e-1744.4440S ribosomal protein S6 OS=Caenorhabditis elegans... [more]
RS6_DICDI1.518e-1545.8740S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_TOBAC7.053e-1337.5040S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]

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Properties
Property NameValue
Genbank descriptionC34205G02EF PostHarveN Citrus clementina cDNA clone C34205G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932202 ID=FC932202; Name=FC932202; organism=Citrus clementina; type=EST; length=714bp
AGGGCGAGGGTGAGCTCCCCGGTCTCACCGACACCGTTGTCCCCAAGCGT
CTCGGCCCCAAGCGTGCCACCAAGATCCGCCGCTTCTTCGGTCTCGACAA
GAAGGACGACGTTCGCAAGTTCGTCATCCGCCGTACCGTCACCAAGGAGG
GAAAGCAGGACTACACCAAGGCCCCCAAGATCCAGCGTCTGGTTACTCCC
CAGCGTCTCCAGCGCAAGCGCCAACGCGTTGCTATCAAGCGCCGCCGTGC
TGAGACTGCCCGCGATGCTGCTAACGACTACGCCAAGCTCCTTGCCGGCC
GTGTCCACGAGGAGAAGGCCAAGCGTGATGAGCTCCGCAAGCGGAGGGCT
TCCTCCATGCGGAAGTAAACTTCCAGACCCGCGGTTTTATGATTTCGTTC
TGCGGCGATGGGGTTTAATGAAGGAGCTTCACGTCTCTGGGATGATTTGA
GGGGAATTCACAAAAAAATGAATCACTCAGAGGCGCGGAGGATACATGTC
TGATAAAAAGAAAAGGGAACAAGAGAAGAGACGGGAAACAGGTTTCAAAA
CGTACAAAGCAGGCTGAGTGGTTGATACTCCCTTGTGTTTGGCTACAGTG
ATTTCGGGCCTTGGGAGTCGCATGCATACCCTGTGTTGACCTACCCTTTT
TGATGACCCTTTTTTTTGATGGAGTGCATGCAATTTCAATACTCAGTCCT
GTTAATGCTCAAAA
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