FC932207

Overview
NameFC932207
Unique NameFC932207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 73/133 (54.89%), Postives = 98/133 (73.68%), Query Frame = 3
Query:   63 GAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G AG   + T GLP+GA + C DN+GAR++ +I VK    +  R+PAAGVGDM MA+VKKG PE+R KV+ AVV+RQ +P+RRPDG  + FEDNA V+V   GE++GS I GPV +EAAE WPRIA+ + +++
Sbjct:    3 GIAG---RQTRGLPLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.171e-35
Identity = 71/133 (53.38%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   63 GAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G AG +++   GLP+GA + C DN+GAR++ +I VK    +  R+PAAGVGDM +A+VKKG PE+R KV+ AVV+RQ +P+RRPDG  + FEDNA V+V   GE++GS I GPV +EAAE WPRIA+ + +++
Sbjct:    3 GIAGREIR---GLPLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            M K+G+G  A ++ ++  GL VG+ +   DNSGA+ + II V G   RL R+P AG+GD+V+ TVKKG PE+RK+V+ AV+VRQ +P+RRPDG ++ FEDNA  IV  +G  KGS I GP+ KE AE WP++A+ + +V+
Sbjct:    1 MPKKGKGKPAFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPIAKEVAERWPQLANIATIVV 140          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.982e-34
Identity = 68/127 (53.54%), Postives = 91/127 (71.65%), Query Frame = 3
Query:   78 KLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVV 458
            + KMT G+ V  +M C DNSGA+ L  I VK    RLNRLPAA  GD+ + +VKKGKPELRKKV  A+++RQ K WRR DG  + FEDNA V++N KGE++G+ I GPV +E A++WP+I+S +  +
Sbjct:   19 RYKMTRGIQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPVPREVADMWPKISSQASSI 145          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 3
Query:   90 TLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            T GLP+GA++ C DN+GA+ + +I VK +     R+PAAGVGDM +A+VKKG PE+R KV+ AVVVRQ +P+RR DG  + FEDNA V+V   GE++GS I GPV +EAAE WPRIA+ S  ++
Sbjct:    9 TRGLPLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAISSTIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 68/140 (48.57%), Postives = 101/140 (72.14%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            M+K+ + G   ++  +  GL VG+ +   DNSGA+ + IISV  +  RL RLP+AGVGD+V+ +VKKG P++R++V+ AVVVRQ +P+RRPDG ++ FEDNA VIVN  G  +GS + GP+ +EAAE WPR+A  + +++
Sbjct:    1 MAKKKKYGVVVSRYGVNTGLQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAERWPRVAKIATMIV 140          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 70/137 (51.09%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   51 RGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            +G  GA G +  +  GL VG+ +   DNSGA+   II V G   RL R+P A VGDMV+ TVKKG PE+RK+V+ A+V+RQ +P+RRPDG ++ FEDNA VIV+  G  KGS I GPV +EAAE WP++A+ + +++
Sbjct:    3 KGAAGA-GPRRHIAAGLQVGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPVAREAAERWPKVANIASIII 138          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.008e-32
Identity = 68/126 (53.97%), Postives = 93/126 (73.81%), Query Frame = 3
Query:   84 KMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            K+T  LPVGA + C DN+GAR + IISV+G      RL AAGVGDMV+ +VKKG  ++R++V+ AV+VRQ K +RRPDG+ + FEDNA VIV+ +G +KGS I GPV KEAA+ WP + S + +++
Sbjct:    7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKEAADRWPSVGSAASIIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.246e-32
Identity = 69/121 (57.02%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   99 LPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            LPVGA + C DN+GAR L II+VKG      RLP AG+GDMV+ +VK+G P++RK+V+ AV+VRQ K +RRPDG  + FEDNA VIV   G  +GS I GPV KEAAE WPRI S + +++
Sbjct:   13 LPVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPVAKEAAERWPRIGSIASIIV 133          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_IGNH4 (50S ribosomal protein L14P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.246e-32
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 3
Query:   57 RGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            +  A  ++ K+  GL VG+ +   DNSGA+   II V G   RL R+P AGVGDMV+ TVKKG PE+R +V+ A+VVRQ KP+RRPDG ++ FEDNA VIV+  G  +GS I GPV +EA E WPRI + + +V+
Sbjct:    3 KASANKSRRKVVTGLQVGSYVKVTDNSGAKVAMIIGVPGYHGRLRRIPPAGVGDMVVVTVKKGTPEMRHQVVRAIVVRQRKPFRRPDGTWVAFEDNAVVIVSEDGTPRGSEIRGPVAREAVERWPRIGNVASIVV 137          
The following BLAST results are available for this feature:
BLAST of FC932207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RL14_THEAC4.373e-3654.8950S ribosomal protein L14P OS=Thermoplasma acidoph... [more]
RL14_THEVO2.171e-3553.3850S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL14_STAMF1.407e-3450.0050S ribosomal protein L14P OS=Staphylothermus mari... [more]
RL23_ENCCU6.982e-3453.5460S ribosomal protein L23 OS=Encephalitozoon cunic... [more]
RL14_PICTO9.119e-3455.6550S ribosomal protein L14P OS=Picrophilus torridus... [more]
RL14_AERPE3.465e-3348.5750S ribosomal protein L14P OS=Aeropyrum pernix GN=... [more]
RL14_HYPBU4.526e-3351.0950S ribosomal protein L14P OS=Hyperthermus butylic... [more]
RL14_METTH1.008e-3253.9750S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_METKA2.246e-3257.0250S ribosomal protein L14P OS=Methanopyrus kandler... [more]
RL14_IGNH42.246e-3251.8550S ribosomal protein L14P OS=Ignicoccus hospitali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205G07EF PostHarveN Citrus clementina cDNA clone C34205G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932207 ID=FC932207; Name=FC932207; organism=Citrus clementina; type=EST; length=697bp
GAACCTTTTTCACCCAACTTCCCCCGTGATCATCAGCCATCATGTCTAAG
AGAGGTCGTGGCGGTGCCGCCGGCAACAAGCTCAAGATGACTCTCGGTCT
GCCTGTTGGCGCCGTGATGAACTGCTGCGACAACTCCGGTGCTCGCAACT
TGTACATCATCTCCGTCAAGGGCATCGGTGCCCGCCTGAACCGTCTCCCC
GCTGCTGGTGTCGGAGACATGGTCATGGCCACCGTCAAGAAGGGAAAGCC
CGAGCTCCGCAAGAAGGTTATGCCCGCTGTCGTTGTCCGCCAGAGCAAGC
CCTGGCGCCGCCCCGACGGTATCTTCCTGTACTTCGAGGACAACGCAGGA
GTTATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACCGGTCC
CGTCGGAAAGGAAGCTGCTGAGCTCTGGCCCCGTATTGCCTCCAACTCCG
GTGTCGTCATGTAAAGAGAGAAACCCCGAATTTTTAAAGAAAAAGAACGA
TACCAAACCTCAATCTTCTTGGGACCTGGAATGCGGTGCATATGAGACCA
TAGGATTAAAATGGGAGCTGGACAGGTGGGGTCCATTTGACGAAATCCAA
CTGTTAATTCTAAAGCCGGTTTTATCCTCCATCTTCGTGTTTCTCCCTCC
CTCTACTGGCGGCTCTCGGAAGTATTGTTCTAAAACACATCCTTTTG
back to top