FC932207

Overview
NameFC932207
Unique NameFC932207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 63/128 (49.22%), Postives = 87/128 (67.97%), Query Frame = 3
Query:   78 KLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            K  +T GL  G+++ C DN+GAR L I SV G   R NR P AG+GD +  +V KG PE+R++V+ AVVVRQ KP RRPDG  + FEDNA VI++  GE +G+ I GP+ +E AE +  IAS + +++
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_SULSO (50S ribosomal protein L14P OS=Sulfolobus solfataricus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 62/130 (47.69%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   72 GNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G++  +T  L   +V+N  DNSG +   II V G    L R+P A + DMVM ++KKG PE+RK+   AV+VRQ  P+RRPDG ++ FEDNA VI+N  G  KG+ + GP+ +EAAE WP+IAS + +V+
Sbjct:    9 GSRKGLTPALQHYSVVNVADNSGGKEAMIIGVYGYRGVLRRVPFANIADMVMVSIKKGTPEVRKQKFRAVIVRQRMPYRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIASLATLVV 138          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   72 GNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G++  +T  +    ++N  DNSGA+   IISV G    L R+P A VGD+VM +V+KG P++RK+   AVV+RQ  P+RRPDG ++ F+DNA VIVN  G  KG+ I GPV +EAAE WP++AS + +++
Sbjct:    9 GSRKGLTPAVQNYTMVNVSDNSGAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIVNPDGTAKGTEIRGPVAREAAERWPKVASLATLIV 138          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.384e-28
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   72 GNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G++  +T GL     +   DNSGA+   II + G    L R+P A + D+VM +V+KG PE+RK+   AV+VRQ  P+RRPDG ++ FEDNA VIVN  G  KG+ I GP+ KEAAE WP++AS + +V+
Sbjct:   12 GSRKGLTPGLQHYTTVTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPIAKEAAERWPKVASIATMVI 141          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_PYRIL (50S ribosomal protein L14P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 66/144 (45.83%), Postives = 96/144 (66.67%), Query Frame = 3
Query:   42 MSKRGRGGAAG--NKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARL--NRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            M+KRG     G   +  +T G+ + +++   DNSGAR + +I V G  ++    R+P AGVGDMV+  V++GKPELRK++  A+VVRQ +P+RRPDG ++ FEDNA VIV  +G+ KGS I GPV  EA   WP IA+ + +++
Sbjct:    1 MAKRGGKRTVGVSYRFHVTPGIFLNSLVPVADNSGARLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIIV 144          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 62/144 (43.06%), Postives = 101/144 (70.14%), Query Frame = 3
Query:   42 MSKRGRGGAAGN--KLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARL--NRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            M+KRG     G   +  +T G+ + +++N  DNSGA+ + +I V G  ++    R+P   VGDMV+ +V++GKPE+RK+++ A+VVRQ +P+RRPDG ++ FEDNA VIV  +G++KG+ + GPV  EAA+ WP++AS + +++
Sbjct:    1 MAKRGGPRTVGVPWRFHLTPGIFMNSLVNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPVAMEAAQRWPQVASIATMII 144          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 66/144 (45.83%), Postives = 96/144 (66.67%), Query Frame = 3
Query:   42 MSKRGRGGAAG--NKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARL--NRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            M+KRG     G   +  +T G+ + +++   DNSGA+ + +I V G  ++    R+P AGVGDMV+  V++GKPELRK++  A+VVRQ +P+RRPDG ++ FEDNA VIV  +G+ KGS I GPV  EA   WP IA+ + +V+
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 66/144 (45.83%), Postives = 96/144 (66.67%), Query Frame = 3
Query:   42 MSKRGRGGAAG--NKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARL--NRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            M+KRG     G   +  +T G+ + +++   DNSGA+ + +I V G  ++    R+P AGVGDMV+  V++GKPELRK++  A+VVRQ +P+RRPDG ++ FEDNA VIV  +G+ KGS I GPV  EA   WP IA+ + +V+
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_METAC (50S ribosomal protein L14P OS=Methanosarcina acetivorans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 61/130 (46.92%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   72 GNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G +  +   L  GA + C DN+GA+ + IISVK      NR+P AG+GDM + +VKKG PE+RK+V+ AVVVRQ + +RRPDG+ + FEDNA VI + +G  KG+ I GPV +E AE +P+I + + +++
Sbjct:    3 GMRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_KORCO (50S ribosomal protein L14P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 3
Query:   72 GNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G K K+T GLPV A + C DN+GA+ L II V G   R +R+P A VGDMV   VK+GK +L  K   A+VVRQ  P+RR +G ++ FEDNA V+VN  G  +GS   GP+ KEA E WP ++  S  V+
Sbjct:   12 GVKPKITHGLPVRARLKCADNTGAKLLMIIGVHGYKGRKDRVPTASVGDMVTVVVKRGKYDLMHKPFKAIVVRQRMPYRRKNGQWVVFEDNAAVLVNDDGTPRGSEFRGPIAKEAIERWPSLSVISAQVV 141          
The following BLAST results are available for this feature:
BLAST of FC932207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RL14_HALS31.968e-2849.2250S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_SULSO2.570e-2847.6950S ribosomal protein L14P OS=Sulfolobus solfatari... [more]
RL14_METS53.356e-2847.6950S ribosomal protein L14P OS=Metallosphaera sedul... [more]
RL14_SULTO4.384e-2847.6950S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_PYRIL9.766e-2845.8350S ribosomal protein L14P OS=Pyrobaculum islandic... [more]
RL14_CALMQ9.766e-2843.0650S ribosomal protein L14P OS=Caldivirga maquiling... [more]
RL14_PYRAE1.666e-2745.8350S ribosomal protein L14P OS=Pyrobaculum aerophil... [more]
RL14_PYRCJ2.176e-2745.8350S ribosomal protein L14P OS=Pyrobaculum calidifo... [more]
RL14_METAC2.176e-2746.9250S ribosomal protein L14P OS=Methanosarcina aceti... [more]
RL14_KORCO2.176e-2749.2350S ribosomal protein L14P OS=Korarchaeum cryptofi... [more]

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Properties
Property NameValue
Genbank descriptionC34205G07EF PostHarveN Citrus clementina cDNA clone C34205G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932207 ID=FC932207; Name=FC932207; organism=Citrus clementina; type=EST; length=697bp
GAACCTTTTTCACCCAACTTCCCCCGTGATCATCAGCCATCATGTCTAAG
AGAGGTCGTGGCGGTGCCGCCGGCAACAAGCTCAAGATGACTCTCGGTCT
GCCTGTTGGCGCCGTGATGAACTGCTGCGACAACTCCGGTGCTCGCAACT
TGTACATCATCTCCGTCAAGGGCATCGGTGCCCGCCTGAACCGTCTCCCC
GCTGCTGGTGTCGGAGACATGGTCATGGCCACCGTCAAGAAGGGAAAGCC
CGAGCTCCGCAAGAAGGTTATGCCCGCTGTCGTTGTCCGCCAGAGCAAGC
CCTGGCGCCGCCCCGACGGTATCTTCCTGTACTTCGAGGACAACGCAGGA
GTTATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACCGGTCC
CGTCGGAAAGGAAGCTGCTGAGCTCTGGCCCCGTATTGCCTCCAACTCCG
GTGTCGTCATGTAAAGAGAGAAACCCCGAATTTTTAAAGAAAAAGAACGA
TACCAAACCTCAATCTTCTTGGGACCTGGAATGCGGTGCATATGAGACCA
TAGGATTAAAATGGGAGCTGGACAGGTGGGGTCCATTTGACGAAATCCAA
CTGTTAATTCTAAAGCCGGTTTTATCCTCCATCTTCGTGTTTCTCCCTCC
CTCTACTGGCGGCTCTCGGAAGTATTGTTCTAAAACACATCCTTTTG
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