FC932207

Overview
NameFC932207
Unique NameFC932207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 3
Query:   78 KLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            K  +T GL  G+++ C DN+GAR L +ISV G     NR P AG+GD V  +V KG PE+R++V+ AVVVRQ KP RRP+G  + FEDNA VI++   E +G+ I GPV +E AE +  IAS + +++
Sbjct:    5 KADVTQGLSKGSLITCADNTGARELKVISVAGYSGTKNRHPKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVIIDDLDEPRGTEIKGPVAREVAERFGSIASTATMIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            M+K+   G    +  +T  +PVGA + C DNSGA+ L +I+V     R +RLP+A VGD     VKKG  ELRK+V  AV++RQ  P RR +G+ + FEDNA V++  +GE KG+ I GPV  EA+E WPR+A+ + +V+
Sbjct:    1 MAKQAGKGVEEFRPYVTKVIPVGANIVCADNSGAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLITPEGETKGTDIKGPVAAEASEKWPRVANLASMVV 140          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_PYRAR (50S ribosomal protein L14P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 65/144 (45.14%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   42 MSKRGRGGAAG--NKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARL--NRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            M+KRG     G   +  +T G+ + +++   DNSGA+ + +I V G  ++    R+P AGVGDMV+  VK+GKPELR+++   +VVRQ +P+RRPDG ++ FEDNA VIV  +G+ KGS I GPV  EA   WP IA+ + +V+
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVKEGKPELRRQIFRGIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_METBF (50S ribosomal protein L14P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 60/130 (46.15%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   72 GNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G +  +   L  GA + C DN+GA+ + IISVK      NR+P AG+GDM + +VKKG PE+RK+V+ AVVVRQ + +RRPDG+ + FEDNA VI + +G  KG+ I GP+ +E AE +P+I + + +++
Sbjct:    3 GIRSNIPRALNAGAKVPCVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLRVSFEDNAMVITDEEGIPKGTDIKGPIAREVAERYPKIGTTASIIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_METMA (50S ribosomal protein L14P OS=Methanosarcina mazei GN=rpl14p PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = 3
Query:   72 GNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G +  +   L  GA + C DN+GA+ + IISVK      NR+P AG+GDM + +VKKG PE+RK+++ AVVVRQ + +RRPDG+ + FEDNA VI +  G  KG+ I GPV +E AE +P+I + + +++
Sbjct:    3 GIRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQILLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEDGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_HALWD (50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 60/128 (46.88%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   78 KLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            K  +T GL  G+++ C DN+GAR L +ISV G     NR P AG+GD V  +V KG PE+R++V+ AV+VRQ K  RRPDG  + FEDNA VI++   E +G+ I GP+ +E AE +  IAS + +++
Sbjct:    5 KADVTKGLERGSLVTCADNTGARELKVISVMGSSGTKNRHPKAGIGDQVTVSVTKGTPEMRRQVLEAVIVRQRKSIRRPDGTRVKFEDNAAVIIDEMEEPRGTEIKGPIAREVAERFGSIASTATMIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_NATPD (50S ribosomal protein L14P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 56/125 (44.80%), Postives = 84/125 (67.20%), Query Frame = 3
Query:   87 MTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            +T GL  G+++ C DN+GAR L + S+ G     NR P AG+GD +  +V KG PE+R++V+ AVV+RQ KP RRPDG  + FEDNA VIV+   + +G+ + GP+ +E AE +  IAS + +++
Sbjct:    8 VTQGLEKGSLITCADNTGARELKVTSISGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVIRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAERFGSIASTATIIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 58/130 (44.62%), Postives = 85/130 (65.38%), Query Frame = 3
Query:   72 GNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            G++   T  L   + +   DNSGA+   II + G    L R+P A + D+VM +V+KG P++RK+   AV+VRQ  P+RRPDG ++ FEDNA VI+N  G  KG+ + GP+ +EAAE WP+IAS + +V+
Sbjct:    9 GSRKGFTPALQHNSSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIASVATMVI 138          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 57/125 (45.60%), Postives = 85/125 (68.00%), Query Frame = 3
Query:   87 MTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            +T GL  G+++ C DN+GAR L +ISV G     NR P AG+GD +  +V KG PE+R++V+ AVVVRQ KP RRPDG  + FEDNA VIV+   + +G+ + GP+ +E A+ +  +AS + +++
Sbjct:    8 VTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 54/126 (42.86%), Postives = 86/126 (68.25%), Query Frame = 3
Query:   84 KMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            K+   L  G+ M C DN+GAR + I+SV G     NR P  G+GD+   TVKKG P++++K++ AVVVRQ K +RRP+G+ + FE+NA +++N  G+ +G+ I GPV +E AE +P++ S + +++
Sbjct:    7 KIPRALQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPKVGSMATIII 132          
The following BLAST results are available for this feature:
BLAST of FC932207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RL14_HALLT2.176e-2748.4450S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_NITMS3.711e-2745.7150S ribosomal protein L14P OS=Nitrosopumilus marit... [more]
RL14_PYRAR4.847e-2745.1450S ribosomal protein L14P OS=Pyrobaculum arsenati... [more]
RL14_METBF4.847e-2746.1550S ribosomal protein L14P OS=Methanosarcina barke... [more]
RL14_METMA6.330e-2746.1550S ribosomal protein L14P OS=Methanosarcina mazei... [more]
RL14_HALWD8.267e-2746.8850S ribosomal protein L14P OS=Haloquadratum walsby... [more]
RL14_NATPD1.842e-2644.8050S ribosomal protein L14P OS=Natronomonas pharaon... [more]
RL14_SULAC3.142e-2644.6250S ribosomal protein L14P OS=Sulfolobus acidocald... [more]
RL14_HALMA3.142e-2645.6050S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_METLZ3.473e-2542.8650S ribosomal protein L14P OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionC34205G07EF PostHarveN Citrus clementina cDNA clone C34205G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932207 ID=FC932207; Name=FC932207; organism=Citrus clementina; type=EST; length=697bp
GAACCTTTTTCACCCAACTTCCCCCGTGATCATCAGCCATCATGTCTAAG
AGAGGTCGTGGCGGTGCCGCCGGCAACAAGCTCAAGATGACTCTCGGTCT
GCCTGTTGGCGCCGTGATGAACTGCTGCGACAACTCCGGTGCTCGCAACT
TGTACATCATCTCCGTCAAGGGCATCGGTGCCCGCCTGAACCGTCTCCCC
GCTGCTGGTGTCGGAGACATGGTCATGGCCACCGTCAAGAAGGGAAAGCC
CGAGCTCCGCAAGAAGGTTATGCCCGCTGTCGTTGTCCGCCAGAGCAAGC
CCTGGCGCCGCCCCGACGGTATCTTCCTGTACTTCGAGGACAACGCAGGA
GTTATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACCGGTCC
CGTCGGAAAGGAAGCTGCTGAGCTCTGGCCCCGTATTGCCTCCAACTCCG
GTGTCGTCATGTAAAGAGAGAAACCCCGAATTTTTAAAGAAAAAGAACGA
TACCAAACCTCAATCTTCTTGGGACCTGGAATGCGGTGCATATGAGACCA
TAGGATTAAAATGGGAGCTGGACAGGTGGGGTCCATTTGACGAAATCCAA
CTGTTAATTCTAAAGCCGGTTTTATCCTCCATCTTCGTGTTTCTCCCTCC
CTCTACTGGCGGCTCTCGGAAGTATTGTTCTAAAACACATCCTTTTG
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