FC932211

Overview
NameFC932211
Unique NameFC932211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15473 contig Ccv1_Contig15473:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE1_BACSU (Branched-chain-amino-acid transaminase 1 OS=Bacillus subtilis GN=ilvE PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            D  +LGFG    DYM+ M       +   R++ Y  + L PSS V +YGQ +FEG+KAYR +DG+++LFRPDQN  RL    ERM MP    +  ++A+ Q     K WVP     SLYIRP ++ + P
Sbjct:   18 DPSSLGFGQYFTDYMFVMDYEEGIGWHHPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRVLLFRPDQNIKRLNRSCERMSMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRPFVIATEP 146          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STRCO (Probable branched-chain-amino-acid aminotransferase OS=Streptomyces coelicolor GN=ilvE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  203 EPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGS 622
            +PSA+   +S       N GFG    D+M T+K +    +  G+L  Y  + L P++ VL+Y Q +FEG+KAYR+ DG +  FRP++N  R Q  + R+ MP   +D FI+A       +++WVP   G+ SLY+RP ++ +
Sbjct:    9 KPSAHPLSDSERAAILANPGFGRHFTDHMVTIKWTEGRGWHDGQLVPYAPLSLDPATMVLHYAQEIFEGLKAYRRPDGSVATFRPEKNGARFQASSRRLGMPELPVDTFIEACDALVAQDEKWVPAHGGEESLYLRPFMIAT 150          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE2_BACSU (Branched-chain-amino-acid aminotransferase 2 OS=Bacillus subtilis GN=ilvK PE=1 SV=5)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            D + L FG    D+M+ M  + D  +   R+  Y  + + P++ V +YGQ +FEG+KAY  ED  ++LFRP++N  RL    +R+C+P    +Q ++ +KQ    +K W+P     SLYIRP ++ + P
Sbjct:   19 DPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYGQTVFEGLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDWIPNAEGTSLYIRPFIIATEP 147          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_MYCTU (Probable branched-chain-amino-acid aminotransferase OS=Mycobacterium tuberculosis GN=ilvE PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  260 GFGLTPADYMYTMKCSNDYFE-----KGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVP-PPGKGSLYIRPLLVGSGP 628
            GFG    D+M ++    DY E       R+  YG IEL PS+ VL+Y Q +FEG+KAYR  DG ++ FR D NA RL++ A R+ +P      FI++++Q    +K WVP   G+ +LY+RP +  + P
Sbjct:   30 GFGKYHTDHMVSI----DYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFIFATEP 154          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_MYCLE (Probable branched-chain-amino-acid aminotransferase OS=Mycobacterium leprae GN=ilvE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  260 GFGLTPADYMYTMKCSNDYFE-----KGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVP-PPGKGSLYIRPLLVGSGP 628
            GFG    D+M ++    DY +       R+  YG I+L PS+ VL+Y Q +FEG+KAYR  DG ++ FRPD NA RL++ A R+ +P    + FID++ Q    +  WVP   G+ +LY+RP +  + P
Sbjct:   30 GFGKYHTDHMVSI----DYIDGRGWHDARVIPYGPIQLDPSAIVLHYAQEVFEGLKAYRWADGSIVSFRPDANAARLRSSARRIAIPELPDELFIDSLCQLIAVDNAWVPRVGGEEALYLRPFIFATEP 154          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STAAR (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MRSA252) GN=ilvE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDY-FEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 613
            D   LGFG    DYM     S DY  +KG    ++  YG IE+SP++  ++YGQ +FEG+KAY+K DG++ LFRPD+N  RL     R+ MP  +  + ++ +KQ     + WVP     SLYIRP +
Sbjct:   18 DTSQLGFGKYFTDYML----SYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAYKK-DGEVALFRPDENFKRLNNSLARLEMPQVNEGELLEGLKQLVDLEREWVPEGEGQSLYIRPFV 140          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT_NEMVE (Branched-chain-amino-acid aminotransferase OS=Nematostella vectensis GN=v1g246094 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 622
            D + L FG    D+   +K S+ D ++  ++  YG + L P++  L+YG   FEGMKAYR +DG++ +FRP  N  R+   A R C+P+ +  + ++ +++     + WVP     SLYIRP ++G+
Sbjct:   61 DPNTLVFGKEFTDHALILKWSDEDGWDNPQIIPYGNLSLPPAASALHYGLECFEGMKAYRGDDGKIRMFRPLMNMKRMNNSAARACLPTFNSGEMVECIRKLIHLEREWVPHSNTCSLYIRPTMIGT 187          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT1_MOUSE (Branched-chain-amino-acid aminotransferase, cytosolic OS=Mus musculus GN=Bcat1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 47/129 (36.43%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            D D+L FG T  D+M T++ S+   +EK  +  +G + + P++ VL+Y   LFEG+KA+R  D ++ LFRPD N  R+   A R  +P    ++ +  + Q    ++ WVP     SLYIRP  +G+ P
Sbjct:   43 DPDSLVFGATFTDHMLTVEWSSASGWEKPHIKPFGNLPIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMDRMCRSAVRTTLPMFDKEELLKCILQLLQIDQEWVPYSTSASLYIRPTFIGTEP 171          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STAEQ (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ilvE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 613
            D  NLGFG    DYM ++    D  +   ++  Y   E+SP++  L+YGQ +FEG+KAY K +G+++LFRPDQN  R+     R+ MP    +  ++ +KQ     + WVP     SLYIRP +
Sbjct:   18 DTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAAQGLHYGQAVFEGLKAY-KHNGEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLVDVERDWVPEGEGQSLYIRPFV 140          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STAES (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ilvE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.874e-17
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 613
            D  NLGFG    DYM ++    D  +   ++  Y   E+SP++  L+YGQ +FEG+KAY K +G+++LFRPDQN  R+     R+ MP    +  ++ +KQ     + WVP     SLYIRP +
Sbjct:   18 DTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAAQGLHYGQAVFEGLKAY-KHNGEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLIDVERDWVPEGEGQSLYIRPFV 140          
The following BLAST results are available for this feature:
BLAST of FC932211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVE1_BACSU7.808e-2342.64Branched-chain-amino-acid transaminase 1 OS=Bacill... [more]
ILVE_STRCO3.627e-2036.62Probable branched-chain-amino-acid aminotransferas... [more]
ILVE2_BACSU6.840e-1935.66Branched-chain-amino-acid aminotransferase 2 OS=Ba... [more]
ILVE_MYCTU1.524e-1840.31Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_MYCLE1.990e-1839.53Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAAR7.563e-1841.41Probable branched-chain-amino-acid aminotransferas... [more]
BCAT_NEMVE7.563e-1834.65Branched-chain-amino-acid aminotransferase OS=Nema... [more]
BCAT1_MOUSE1.685e-1736.43Branched-chain-amino-acid aminotransferase, cytoso... [more]
ILVE_STAEQ2.200e-1738.71Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAES2.874e-1738.71Probable branched-chain-amino-acid aminotransferas... [more]

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Properties
Property NameValue
Genbank descriptionC34205G11EF PostHarveN Citrus clementina cDNA clone C34205G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932211 ID=FC932211; Name=FC932211; organism=Citrus clementina; type=EST; length=630bp
GGGAATCTGTTCCGTCCGTACTTCATATTGCTCAATTACCTAGCTACCTT
TTCTCAGAAGAATGATGAGGCCAGCAACAATGATTCGAAGCGCATGCTTA
CGAAATTTTAGTCAATCTTTGCGGGTTGGTTCTGCTTTTCTCAAGTCTGG
AGATTTCTGTAGACACACGTCCCAGGCTGCTGCTTCTCTGCAACAAGTTT
GTGAACCATCTGCTTACAGCGACGATGAGAGTGCTGATCATATGGACTGG
GATAACCTTGGCTTTGGTCTTACACCAGCGGACTACATGTACACCATGAA
ATGTTCTAACGACTATTTTGAGAAAGGACGGCTGAGTCGCTATGGAAAGA
TTGAGTTGAGCCCTTCTTCAGGAGTCTTAAATTATGGGCAGGGACTCTTT
GAAGGTATGAAAGCATACAGAAAGGAAGATGGGCAACTCATTCTCTTCCG
TCCTGATCAAAATGCCACCCGCTTGCAAACTGGTGCCGAGAGAATGTGCA
TGCCTTCTCCCTCAATTGATCAATTCATTGACGCTGTTAAACAAACTGCT
CTTGCCAATAAGCGTTGGGTTCCTCCTCCTGGGAAAGGGTCTTTGTACAT
AAGGCCTCTACTTGTCGGAAGTGGTCCTAT
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