FC932211

Overview
NameFC932211
Unique NameFC932211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15473 contig Ccv1_Contig15473:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT_DICDI (Branched-chain-amino-acid aminotransferase OS=Dictyostelium discoideum GN=bcaA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.874e-17
Identity = 47/130 (36.15%), Postives = 79/130 (60.77%), Query Frame = 2
Query:  239 HMDWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLYIRPLLVGS 622
            + D   L FG   +D+M  ++ + +  +   ++S Y  + + PS+ VL+Y    FEGMKAY+  +G++ LFRPDQN  R    A+R+C+P  + +  I+ +K+  + +K W+ P GKG SLY+RP L+ +
Sbjct:   33 YTDKTKLVFGKQFSDHMIEVQWTKEEGWGVPKISGYHNLSIPPSASVLHYALECFEGMKAYKDSNGKIRLFRPDQNMNRFLNSAKRICLPEFNKEAVIELIKKLCVLDKDWI-PEGKGYSLYLRPTLIAT 161          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT2_PONAB (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Pongo abelii GN=BCAT2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 45/124 (36.29%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  257 LGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            L FG T  D+M  ++ S+  + + R+  +  + L P+S  L+Y   LFEGMKA++ +D Q+ LFRP  N  R+   A R+C+PS    + ++ +++    +K WVP     SLY+RP+L+G+ P
Sbjct:   55 LVFGKTFTDHMLMVEWSDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEP 178          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT2_HUMAN (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Homo sapiens GN=BCAT2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 44/124 (35.48%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  257 LGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            L FG T  D+M  ++ ++  + + R+  +  + L P+S  L+Y   LFEGMKA++ +D Q+ LFRP  N  R+   A R+C+PS    + ++ +++    +K WVP     SLY+RP+L+G+ P
Sbjct:   55 LVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEP 178          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT_CAEEL (Branched-chain-amino-acid aminotransferase, cytosolic OS=Caenorhabditis elegans GN=bcat-1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  242 MDWDNLGFGLTPADYMYTMKCSNDYFEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            +D   L FG T ADYM T  C  D  E+G    ++   G++++ P + VL+Y   LFEGMKAYR  D ++ +FRP+ N  R++  A R  +P    ++ I+ + +    ++ WVP     SLY+RP L+G+ P
Sbjct:   65 LDPTKLKFGHTYADYMMT--CDWDA-ERGWHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALRAALPDFDSEEMINVLTELLRLDQEWVPNSDVCSLYLRPTLIGTDP 194          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT1_HUMAN (Branched-chain-amino-acid aminotransferase, cytosolic OS=Homo sapiens GN=BCAT1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 44/129 (34.11%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            D +NL FG    D+M T++ S+++ +EK  +     + L P S  L+Y   LFEG+KA+R  D ++ LF+P+ N  R+   A R  +P    ++ ++ ++Q    ++ WVP     SLYIRP  +G+ P
Sbjct:   43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEP 171          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STAAW (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MW2) GN=ilvE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  257 LGFGLTPADYMYTMKCSNDY-FEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 613
            LGFG    DYM     S DY  +KG    ++  YG IE+SP++  ++YGQ +FEG+KAY K DG++ LFRP++N  RL     R+ MP     + ++ +KQ     + W+P     SLYIRP +
Sbjct:   22 LGFGKYFTDYML----SYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAY-KRDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRPFV 140          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STAAS (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MSSA476) GN=ilvE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  257 LGFGLTPADYMYTMKCSNDY-FEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 613
            LGFG    DYM     S DY  +KG    ++  YG IE+SP++  ++YGQ +FEG+KAY K DG++ LFRP++N  RL     R+ MP     + ++ +KQ     + W+P     SLYIRP +
Sbjct:   22 LGFGKYFTDYML----SYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAY-KRDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRPFV 140          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STAAN (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain N315) GN=ilvE PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  257 LGFGLTPADYMYTMKCSNDY-FEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 613
            LGFG    DYM     S DY  +KG    ++  YG IE+SP++  ++YGQ +FEG+KAY K DG++ LFRP++N  RL     R+ MP     + ++ +KQ     + W+P     SLYIRP +
Sbjct:   22 LGFGKYFTDYML----SYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAY-KRDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRPFV 140          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STAAM (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ilvE PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  257 LGFGLTPADYMYTMKCSNDY-FEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 613
            LGFG    DYM     S DY  +KG    ++  YG IE+SP++  ++YGQ +FEG+KAY K DG++ LFRP++N  RL     R+ MP     + ++ +KQ     + W+P     SLYIRP +
Sbjct:   22 LGFGKYFTDYML----SYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAY-KRDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRPFV 140          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: ILVE_STAAC (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain COL) GN=ilvE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  257 LGFGLTPADYMYTMKCSNDY-FEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 613
            LGFG    DYM     S DY  +KG    ++  YG IE+SP++  ++YGQ +FEG+KAY K DG++ LFRP++N  RL     R+ MP     + ++ +KQ     + W+P     SLYIRP +
Sbjct:   22 LGFGKYFTDYML----SYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAY-KRDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRPFV 140          
The following BLAST results are available for this feature:
BLAST of FC932211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
BCAT_DICDI2.874e-1736.15Branched-chain-amino-acid aminotransferase OS=Dict... [more]
BCAT2_PONAB3.753e-1736.29Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT2_HUMAN8.362e-1735.48Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT_CAEEL1.092e-1636.84Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT1_HUMAN1.863e-1634.11Branched-chain-amino-acid aminotransferase, cytoso... [more]
ILVE_STAAW4.150e-1640.32Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAAS4.150e-1640.32Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAAN4.150e-1640.32Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAAM4.150e-1640.32Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAAC4.150e-1640.32Probable branched-chain-amino-acid aminotransferas... [more]

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Properties
Property NameValue
Genbank descriptionC34205G11EF PostHarveN Citrus clementina cDNA clone C34205G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932211 ID=FC932211; Name=FC932211; organism=Citrus clementina; type=EST; length=630bp
GGGAATCTGTTCCGTCCGTACTTCATATTGCTCAATTACCTAGCTACCTT
TTCTCAGAAGAATGATGAGGCCAGCAACAATGATTCGAAGCGCATGCTTA
CGAAATTTTAGTCAATCTTTGCGGGTTGGTTCTGCTTTTCTCAAGTCTGG
AGATTTCTGTAGACACACGTCCCAGGCTGCTGCTTCTCTGCAACAAGTTT
GTGAACCATCTGCTTACAGCGACGATGAGAGTGCTGATCATATGGACTGG
GATAACCTTGGCTTTGGTCTTACACCAGCGGACTACATGTACACCATGAA
ATGTTCTAACGACTATTTTGAGAAAGGACGGCTGAGTCGCTATGGAAAGA
TTGAGTTGAGCCCTTCTTCAGGAGTCTTAAATTATGGGCAGGGACTCTTT
GAAGGTATGAAAGCATACAGAAAGGAAGATGGGCAACTCATTCTCTTCCG
TCCTGATCAAAATGCCACCCGCTTGCAAACTGGTGCCGAGAGAATGTGCA
TGCCTTCTCCCTCAATTGATCAATTCATTGACGCTGTTAAACAAACTGCT
CTTGCCAATAAGCGTTGGGTTCCTCCTCCTGGGAAAGGGTCTTTGTACAT
AAGGCCTCTACTTGTCGGAAGTGGTCCTAT
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