FC932211

Overview
NameFC932211
Unique NameFC932211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15473 contig Ccv1_Contig15473:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT1_SHEEP (Branched-chain-amino-acid aminotransferase, cytosolic OS=Ovis aries GN=BCAT1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            D   L FG    D+M T++ S +  +EK R+     + L P S  L+Y   LFEG+KA+R  D ++ LFRP+ N  R+   A R  +P+    + ++ ++Q    ++ WVP     SLYIRP  +G+ P
Sbjct:   42 DPSTLVFGTVFTDHMLTVEWSLELGWEKPRIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFRPNLNMDRMYRSAMRATLPAFDKKELLECIQQLVKLDEEWVPYSTSASLYIRPTFIGTEP 170          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT_MONBE (Branched-chain-amino-acid aminotransferase OS=Monosiga brevicollis GN=37018 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  236 DHMDWDNLGFGLTPADYMYTMKCS---NDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 622
            + ++   L FG T +D+M  +KC    N+ +    +S Y  + L+PSS VL+Y    FEGMKA+R +D ++ LFRP+ N  RL   + R+ +P    D+ +  + +  + +K W+P     SLY+RP  +G+
Sbjct:   44 ERVEKTKLVFGHTFSDHM--LKCKWDVNEGWAAPTISPYANLSLAPSSIVLHYAIECFEGMKAFRGDDDRIRLFRPNLNMDRLHRSSVRLALPDFDQDELLKCITELVIKDKDWIPAGRGYSLYLRPTHIGT 173          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT2_MOUSE (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Mus musculus GN=Bcat2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  263 FGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            FG T  D+M  ++ +N   +   R+  +  + L P+   L+Y   LFEG+KAY+  D Q+ LFRP  N  R+   A R+C+P     + ++ ++Q    +K WVP     SLY+RP+L+G+ P
Sbjct:   57 FGKTFTDHMLMVEWNNKAGWGPPRIQPFQNLTLHPACSGLHYSLQLFEGLKAYKGGDQQVRLFRPWLNMDRMLRSARRLCLPDFDKQELLECIRQLIEVDKDWVPDGNGTSLYVRPVLIGNEP 179          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCA1_SCHPO (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Schizosaccharomyces pombe GN=eca39 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDYFEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 622
            +W +L FG    D+M  MK +    EKG     +  +GK+   P+S V +YG   FEGMKA+R E G   LFRP +NA R+ +   R+ +PS    +  + +++      RWVP     SLYIRP  +G+
Sbjct:   31 EWKSLKFGENFTDHMLIMKWNR---EKGWSTPEIVPFGKLCFHPASSVFHYGFECFEGMKAFRDEKGVPRLFRPIKNAERMLSTGTRISLPSFDPAELAEIIRKFVAHENRWVPDQRGYSLYIRPTFIGT 157          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT1_RAT (Branched-chain-amino-acid aminotransferase, cytosolic OS=Rattus norvegicus GN=Bcat1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 43/129 (33.33%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  245 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            D  +L FG +  D+M  ++ ++ Y ++K  +  +  + + P++ VL+Y   LFEG+KA+R  D ++ LFRPD N  R+   A R  +P    ++ +  V Q    ++ WVP     SLYIRP  +G  P
Sbjct:   68 DPSSLVFGASFTDHMLMVEWTSKYGWDKPHIKPFENLSIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDREWVPYSTSASLYIRPTFIGIEP 196          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCA1_YEAST (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=BAT1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  251 DNLGFGLTPADYMYTMKCS-NDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 622
            + L FG T  D+M T+  S  + +    +  YG + L PS+ V +Y   LFEG+KAYR     + +FRPD+N  R+   A R+C+P+   ++ I    +    +K  VP     SLYIRP ++G+
Sbjct:   43 EELVFGQTFTDHMLTIPWSAKEGWGTPHIKPYGNLSLDPSACVFHYAFELFEGLKAYRTPQNTITMFRPDKNMARMNKSAARICLPTFESEELIKLTGKLIEQDKHLVPQGNGYSLYIRPTMIGT 167          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT2_RAT (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Rattus norvegicus GN=Bcat2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  263 FGLTPADYMYTMKC-SNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            FG T  D+M  ++  S   +   R+  +  + L P+   L+Y   LFEG+KAY+  D Q+ LFRP  N  R+   A R+C+P     + ++ ++Q    +K WVP     SLY+RP+L+G+ P
Sbjct:   57 FGKTFTDHMLMVEWNSKTGWGPPRIQPFQNLTLHPACSGLHYSLQLFEGLKAYKGRDKQVRLFRPWLNMDRMLRSARRLCLPDFDKQELLECIRQLIEVDKDWVPDGNGTSLYVRPVLIGNEP 179          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCA2_YEAST (Branched-chain-amino-acid aminotransferase, cytosolic OS=Saccharomyces cerevisiae GN=BAT2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  257 LGFGLTPADYMYTMKCSNDYFEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLYIRPLLVGS 622
            L FG +  D+M T + +    EKG     +  Y  + L PS+ V +Y   LFEGMKAYR  D ++ +FRPD N  R+   A+R+C+P+   ++ I  + +    +K  V P GKG SLYIRP L+G+
Sbjct:   28 LVFGKSFTDHMLTAEWTA---EKGWGTPEIKPYQNLSLDPSAVVFHYAFELFEGMKAYRTVDNKITMFRPDMNMKRMNKSAQRICLPTFDPEELITLIGKLIQQDKCLV-PEGKGYSLYIRPTLIGT 150          
BLAST of FC932211 vs. ExPASy Swiss-Prot
Match: BCAT2_BOVIN (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Bos taurus GN=BCAT2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  263 FGLTPADYMYTMKCSNDYFEKG----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLILFRPDQNATRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 628
            FG T  D+M  ++ +    EKG    R+  +  + L P+   L+Y   LFEGMKA++  D ++ LFRP  N  R+   A R+C+PS    + ++ +++    ++ WVP     SLY+RP+L+G+ P
Sbjct:   57 FGKTFTDHMLMVEWNQ---EKGWGQPRIQPFQNLTLHPACSALHYSLQLFEGMKAFKGGDQRVRLFRPWLNMERMLRSALRLCLPSFDKIELLECIRRLVEVDQDWVPGSMGTSLYVRPVLIGNEP 179          
The following BLAST results are available for this feature:
BLAST of FC932211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
BCAT1_SHEEP9.245e-1634.88Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT_MONBE1.577e-1534.09Branched-chain-amino-acid aminotransferase OS=Mono... [more]
BCAT2_MOUSE2.060e-1534.96Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCA1_SCHPO2.060e-1536.92Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT1_RAT2.690e-1533.33Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCA1_YEAST2.690e-1535.20Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT2_RAT3.513e-1534.96Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCA2_YEAST4.588e-1539.37Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT2_BOVIN8.653e-1434.13Branched-chain-amino-acid aminotransferase, mitoch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205G11EF PostHarveN Citrus clementina cDNA clone C34205G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932211 ID=FC932211; Name=FC932211; organism=Citrus clementina; type=EST; length=630bp
GGGAATCTGTTCCGTCCGTACTTCATATTGCTCAATTACCTAGCTACCTT
TTCTCAGAAGAATGATGAGGCCAGCAACAATGATTCGAAGCGCATGCTTA
CGAAATTTTAGTCAATCTTTGCGGGTTGGTTCTGCTTTTCTCAAGTCTGG
AGATTTCTGTAGACACACGTCCCAGGCTGCTGCTTCTCTGCAACAAGTTT
GTGAACCATCTGCTTACAGCGACGATGAGAGTGCTGATCATATGGACTGG
GATAACCTTGGCTTTGGTCTTACACCAGCGGACTACATGTACACCATGAA
ATGTTCTAACGACTATTTTGAGAAAGGACGGCTGAGTCGCTATGGAAAGA
TTGAGTTGAGCCCTTCTTCAGGAGTCTTAAATTATGGGCAGGGACTCTTT
GAAGGTATGAAAGCATACAGAAAGGAAGATGGGCAACTCATTCTCTTCCG
TCCTGATCAAAATGCCACCCGCTTGCAAACTGGTGCCGAGAGAATGTGCA
TGCCTTCTCCCTCAATTGATCAATTCATTGACGCTGTTAAACAAACTGCT
CTTGCCAATAAGCGTTGGGTTCCTCCTCCTGGGAAAGGGTCTTTGTACAT
AAGGCCTCTACTTGTCGGAAGTGGTCCTAT
back to top