FC932215

Overview
NameFC932215
Unique NameFC932215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932215_ssr47 microsatellite FC932215_ssr47:47..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7906 contig Ccv1_Contig7906:85..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  104 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVG 520
            V+DA   +LGRLAS VAK+LL+G +++  V  E+  +SG       +Y R  R+R +T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + I DA   +RL    K+  LG ++ ++G
Sbjct:    3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  104 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQK-GHK-HCLLGRLASEVGW 523
            V+DA + +LGRLAS+VAK +L G+++  +  E+  ++G   ++      +L+K     P  GP + R P  IF R VRGM+P KT            Y G P   ++    + P+ +    + + GH  +  LG L+ E+G+
Sbjct:   17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  104 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVG 520
            V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      +   I DA   +RL   +K+  LG ++ ++G
Sbjct:    3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137          
The following BLAST results are available for this feature:
BLAST of FC932215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RL13_METBF3.728e-1134.2950S ribosomal protein L13P OS=Methanosarcina barke... [more]
RL13_METKA4.869e-1130.9950S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_METMA8.306e-1135.0050S ribosomal protein L13P OS=Methanosarcina mazei... [more]

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Properties
Property NameValue
Genbank descriptionC34205H03EF PostHarveN Citrus clementina cDNA clone C34205H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932215 ID=FC932215; Name=FC932215; organism=Citrus clementina; type=EST; length=694bp
GGAGAGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAG
AGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGA
GTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGT
GGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAG
AGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGG
TTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTT
TCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGC
ATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAA
GGGGTCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGC
TCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGCACTGCTTGTTAGGTC
GCCTGGCATCTGAGGTTGGATGGAATTATTATGACACCATCAGGGAGCTT
GAGAAGAAGAGAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAAGAAGCA
GCTCAACAAACTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGAACTTGG
CTCTCAATTGGACATCCTTGCTCCTGTCAATATTGATCAGTTAG
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