FC932218

Overview
NameFC932218
Unique NameFC932218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15484 contig Ccv1_Contig15484:40..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932218 vs. ExPASy Swiss-Prot
Match: BABL_CUCSA (Basic blue protein OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:  112 HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 408
            +VVG + GW           +W   + F  GD L+FN+    H+V  V Q  F+ CNT +     T+    + L   G  YFIC+FPGHC  G K+A+N
Sbjct:    3 YVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVN 94
[Close]
BLAST of FC932218 vs. ExPASy Swiss-Prot
Match: BCB2_ARATH (Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.438e-11
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:  166 YSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCL--GGQKLAINV 411
            YS WA  +TF VGD L F + + +H V  V ++ ++ C+ +S     ++    + L   G +YFICS PGHC   GG KLA+NV
Sbjct:   42 YSGWATGKTFRVGDILEFKYGS-SHTVDVVDKAGYDGCDASSSTENHSDGDTKIDLKTVGINYFICSTPGHCRTNGGMKLAVNV 124
The following BLAST results are available for this feature:
BLAST of FC932218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BABL_CUCSA6.457e-1236.36Basic blue protein OS=Cucumis sativus PE=1 SV=1[more]
BCB2_ARATH1.438e-1140.48Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 ... [more]

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Properties
Property NameValue
Genbank descriptionC34205H06EF PostHarveN Citrus clementina cDNA clone C34205H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932218 ID=FC932218; Name=FC932218; organism=Citrus clementina; type=EST; length=640bp
GCAGGGGCGACCCCGGCCTTAAAGAACACAAACAAAACAATGTTTAACAG
ATTTTTTCTTGCAGCGATTGCAATAGCAGCTCTAGTACAGAGCTCGACGG
CACAGACAAGGCATGTGGTGGGTGATGCACTAGGCTGGATTGTTCCTCCT
AATGGTCCTGCTACTTACTCTAACTGGGCTGCAAACCAGACCTTCACCGT
CGGTGACACTCTTGTGTTTAACTTTGCCGCTGGAAACCATGATGTTACTC
GAGTAACACAATCATCATTCAATGCATGCAACACCACTAGTCCCCTATCC
AGAACCACAAATAGCCCTGCGAGTGTTACTCTTACAGCTTCTGGGCCACA
CTACTTCATTTGCTCATTTCCAGGCCACTGCCTCGGCGGTCAGAAATTAG
CCATCAACGTTAGCGCCAGGGGATCTTCTCCTGCTCCTCAACCTTCTTCT
CCGGCCCCTCAGCCCAGCGGTAGTACTCCCTCTCCGGTTCCTGCACCAGC
ACGGACACCGACACCGGCACCAGCACCAGCACCAGAACCAGCAACAACAC
CTACGCCAGCACCAGCATCAGCACCAACACCAACACCGAGATCAGCACCA
ACACCAGCTCCCACAAGACAGCCAGCGACTCATGTTGTTG
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