FC932230

Overview
NameFC932230
Unique NameFC932230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMH_SCHPO (Fumarate hydratase, mitochondrial OS=Schizosaccharomyces pombe GN=fum1 PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 6.701e-51
Identity = 101/148 (68.24%), Postives = 121/148 (81.76%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RSLQNF IGGE+ER+P P+VRAFG+LK+ AA VN E+GLDP +  AI QAAQEV +G+L+D+FPLVV+QTGSGTQSNMN+NEVIANRA EILG   G +K VHPNDHVN SQSSNDTFPTVMHIA+    ++ L+P +K LH +L  K
Sbjct:   82 RSLQNFRIGGEKERLPLPLVRAFGVLKRAAASVNREFGLDPKLADAIEQAAQEVIDGRLDDNFPLVVFQTGSGTQSNMNSNEVIANRAIEILGGTLGSKKPVHPNDHVNMSQSSNDTFPTVMHIASVLQIHTHLLPAMKHLHRALKGK 229          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMH_CAEEL (Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.143e-50
Identity = 100/149 (67.11%), Postives = 114/149 (76.51%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RS  NF IGG  ERMP P++ AFGILKK AA VN E+GLD  +  AI QAA EV +GKL++HFPLV WQTGSGTQSNMN NEVI+NRA EILG + G +K VHPNDHVN SQSSNDTFPT MHIA     NSRL+P LK L  +LH+K+
Sbjct:   65 RSQMNFKIGGPEERMPIPVIHAFGILKKAAALVNTEFGLDKKLADAISQAADEVVDGKLDEHFPLVTWQTGSGTQSNMNVNEVISNRAIEILGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAVGREVNSRLLPALKKLRTALHNKA 213          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMH_DICDI (Fumarate hydratase, mitochondrial OS=Dictyostelium discoideum GN=fumH PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.815e-49
Identity = 98/149 (65.77%), Postives = 120/149 (80.54%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR--GEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RSL+NFDIGGE E+MP  +VR+FGILK+CAA VN +YGLD  I   I +AA EV EGKL+D FPLVV+QTGSGTQSNMNANEVI+NRA E++  KR   +K+VHPNDHVN+SQSSNDTFPT MHIAAA   N +L+P L++L  ++ +K
Sbjct:   47 RSLENFDIGGESEKMPLMVVRSFGILKRCAAIVNKKYGLDATIADNIAKAATEVVEGKLDDQFPLVVFQTGSGTQSNMNANEVISNRAIELMTGKRDFSKKLVHPNDHVNKSQSSNDTFPTCMHIAAAISINEKLVPALEMLLAAMRTK 195          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_RHILO (Fumarate hydratase class II OS=Rhizobium loti GN=fumC PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.913e-46
Identity = 99/150 (66.00%), Postives = 115/150 (76.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL NF IG E++  P  IVRA G++K+ AA+VNME   LDP +GKAI+ AAQEV +GKLNDHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG   G +K VHPNDHVN SQSSNDT+PT MHIA A      LIP L  LH +L +K+
Sbjct:   30 RSLGNFKIGWEKQ--PASIVRALGVVKRAAAEVNMEMKRLDPVVGKAIVDAAQEVIDGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAEQVVHHLIPALHHLHKALDAKA 177          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_CAUCR (Fumarate hydratase class II OS=Caulobacter crescentus GN=fumC PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.221e-45
Identity = 97/150 (64.67%), Postives = 114/150 (76.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL NF IG E++  P P+VRA GI+K+ AA+ N+  G LDP I + I+ AA EV EGKLNDHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K VHPNDHVN SQSSNDTFPT MHIA A      L+P LK LH +L +K+
Sbjct:   28 RSLGNFKIGWEKQ--PLPVVRALGIVKRAAAEANLALGKLDPKIAETIIAAANEVIEGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGEMGSKKPVHPNDHVNMSQSSNDTFPTAMHIACAEQVVHDLLPALKHLHKALAAKA 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_RHIME (Fumarate hydratase class II OS=Rhizobium meliloti GN=fumC PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 5.494e-45
Identity = 97/149 (65.10%), Postives = 114/149 (76.51%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RSL NF IG E++  P  IVRA GI+K+ AA+ NM  G LDPAIG AI++AAQEV +GKL++HFPLVVWQTGSGTQSNMNANEV++NRA E+LG   G +K VHPNDHVN SQSSNDT+PT MHIA A      L+P LK LH +L  K
Sbjct:   28 RSLGNFKIGWEKQ--PLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPALKHLHKALEEK 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_THET2 (Fumarate hydratase class II OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=fumC PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 7.176e-45
Identity = 92/149 (61.74%), Postives = 114/149 (76.51%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL+NF IG +R RMP  I+RA+G+LKK AA+ N+E G L   I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG   G K VHPNDHVNR QSSNDTFPT M++A A   + RL P ++ L  +  +K+
Sbjct:   27 RSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYVHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKA 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_AGRT5 (Fumarate hydratase class II OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=fumC PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 2.727e-44
Identity = 94/149 (63.09%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY-GLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RSL NF IG E++  P  +VRA GI+K+ AA+ NM   GLDP +G AI+ AAQEV +GKL +HFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K VHPNDHVN SQSSNDT+PT MHIA        L+P LK LH +L +K
Sbjct:   28 RSLGNFKIGWEKQ--PASVVRALGIVKQAAARANMALAGLDPKVGDAIIAAAQEVIDGKLTEHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGEMGTKKPVHPNDHVNMSQSSNDTYPTAMHIACVEEIVHHLLPALKHLHTALEAK 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_BRUSU (Fumarate hydratase class II OS=Brucella suis GN=fumC PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.651e-44
Identity = 94/149 (63.09%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RSLQNF IGGER  MP P+V A G++K+ AA+ N+  G LDP +G+ I  AA EV EGKL+DHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K +HPNDHVN SQSSND+FPT +HIA A    +RL P L+ L  +L  K
Sbjct:   28 RSLQNFRIGGER--MPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVK 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_BRUME (Fumarate hydratase class II OS=Brucella melitensis GN=fumC PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 4.651e-44
Identity = 94/149 (63.09%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RSLQNF IGGER  MP P+V A G++K+ AA+ N+  G LDP +G+ I  AA EV EGKL+DHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K +HPNDHVN SQSSND+FPT +HIA A    +RL P L+ L  +L  K
Sbjct:   28 RSLQNFRIGGER--MPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVK 174          
The following BLAST results are available for this feature:
BLAST of FC932230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMH_SCHPO6.701e-5168.24Fumarate hydratase, mitochondrial OS=Schizosacchar... [more]
FUMH_CAEEL1.143e-5067.11Probable fumarate hydratase, mitochondrial OS=Caen... [more]
FUMH_DICDI2.815e-4965.77Fumarate hydratase, mitochondrial OS=Dictyostelium... [more]
FUMC_RHILO2.913e-4666.00Fumarate hydratase class II OS=Rhizobium loti GN=f... [more]
FUMC_CAUCR3.221e-4564.67Fumarate hydratase class II OS=Caulobacter crescen... [more]
FUMC_RHIME5.494e-4565.10Fumarate hydratase class II OS=Rhizobium meliloti ... [more]
FUMC_THET27.176e-4561.74Fumarate hydratase class II OS=Thermus thermophilu... [more]
FUMC_AGRT52.727e-4463.09Fumarate hydratase class II OS=Agrobacterium tumef... [more]
FUMC_BRUSU4.651e-4463.09Fumarate hydratase class II OS=Brucella suis GN=fu... [more]
FUMC_BRUME4.651e-4463.09Fumarate hydratase class II OS=Brucella melitensis... [more]

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Properties
Property NameValue
Genbank descriptionC34206A06EF PostHarveN Citrus clementina cDNA clone C34206A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932230 ID=FC932230; Name=FC932230; organism=Citrus clementina; type=EST; length=446bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAAATGGAAACAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGT
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