FC932230

Overview
NameFC932230
Unique NameFC932230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_SULSO (Fumarate hydratase class II OS=Sulfolobus solfataricus GN=fumC PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.077e-24
Identity = 64/136 (47.06%), Postives = 87/136 (63.97%), Query Frame = 1
Query:   40 RMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            + P  I+ + G+LKK  AKVN + GL D  I  +I++A+ ++ +GKL+D   L V+QTGSGT  NMN NEVIA  A+     K     VHPNDHVN  QSSNDT PT + IAA     +RL+P L+ + +SL+ K+
Sbjct:   17 KFPRRIIWSMGVLKKSCAKVNADLGLLDKKIADSIIKASDDLIDGKLDDKIVLDVFQTGSGTGLNMNVNEVIAEVASSYSNLK-----VHPNDHVNFGQSSNDTVPTAIRIAAVAEVTNRLLPALQQIISSLNKKA 147          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_HAEIN (Aspartate ammonia-lyase OS=Haemophilus influenzae GN=aspA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.982e-24
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEV-AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF+I           VR   ++KK  A  N E G  P+ I KAI+ A  E+   GK  D FP  V+Q G+GT  NMN NEV+AN A E +GHK+GE  +++P DHVN SQS+ND +PT   IA  N +  +LI  ++ LH+S  +K+
Sbjct:   31 RAVENFNISNVTISDVPEFVRGMVMVKKATALANGELGAIPSDIAKAIVAACDEILTTGKCLDQFPSDVYQGGAGTSVNMNTNEVVANLALEKIGHKKGEYNVINPMDHVNASQSTNDAYPTGFRIAVYN-SILKLIDKIQYLHDSFDNKA 180          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_HELPJ (Aspartate ammonia-lyase OS=Helicobacter pylori J99 GN=aspA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.246e-22
Identity = 60/150 (40.00%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+ +NF I  ++       +++F  +KK AA  N + GL D  +  AI  A   + +GK +D F + + Q G+GT +NMN NEVIAN A E +GH++GE +  HPNDHVNRSQS+ND +P+ + IA      S L+  +K L ++   K+
Sbjct:   25 RASENFFITNDKLCSYPVFIKSFAQVKKAAALANAQLGLIDEKLKIAICHACDLLVDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQKGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYE-RLSNLVAPMKALRDAFAQKA 173          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_HELPY (Aspartate ammonia-lyase OS=Helicobacter pylori GN=aspA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.004e-22
Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+ +NF I  ++       +++F  +KK A   N++ GL D  +  AI  A   + +GK +D F + + Q G+GT +NMN NEVIAN A E +GH++GE +  HPNDHVNRSQS+ND +P+ + IA      S L+  +K L ++   K+
Sbjct:   25 RASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQLGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQKGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYE-RLSNLVAPMKALRDAFAQKA 173          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_SERMA (Aspartate ammonia-lyase OS=Serratia marcescens GN=aspA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.456e-21
Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            R+++NF I   +       VR   ++KK AA  N E    P  I   I+QA  EV + GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDH+N+ QS+ND +PT   I A   +N +LI  +  L      K+
Sbjct:   29 RAIENFYISNSKISDVPEFVRGMVMVKKAAAMANKELKTIPRKIADVIIQACDEVLDKGKCMDQFPVDVFQGGAGTSLNMNTNEVLANIGLELMGHQKGEYQYLNPNDHLNKCQSTNDAYPTGFRI-AVYASNQKLIDAINQLREGFDRKA 178          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_SHIFL (Aspartate ammonia-lyase OS=Shigella flexneri GN=aspA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.437e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIA 155          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_ECOLI (Aspartate ammonia-lyase OS=Escherichia coli (strain K12) GN=aspA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.437e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIA 155          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_ECOL6 (Aspartate ammonia-lyase OS=Escherichia coli O6 GN=aspA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.437e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIA 155          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_ECO57 (Aspartate ammonia-lyase OS=Escherichia coli O157:H7 GN=aspA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 9.437e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIA 155          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: ASPA_PSEAE (Aspartate ammonia-lyase OS=Pseudomonas aeruginosa GN=aspA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRL 399
            R++ NF + G        +V A  ++K+ AA  N + G L      AI +A   +  G  ++ F + + Q G+GT +NMNANEVIAN A E +GH +GE K +HPN+ VN +QS+ND +PT + +    G+++ L
Sbjct:   31 RAVNNFRLSGVPLSHYPKLVVALAMVKQAAADANRQLGHLPEDKHAAISEACARLIRGDFHEQFVVDMIQGGAGTSTNMNANEVIANIALEAMGHTKGEYKYLHPNNDVNMAQSTNDAYPTAIRLGLLLGHDTLL 165          
The following BLAST results are available for this feature:
BLAST of FC932230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_SULSO1.077e-2447.06Fumarate hydratase class II OS=Sulfolobus solfatar... [more]
ASPA_HAEIN6.982e-2443.05Aspartate ammonia-lyase OS=Haemophilus influenzae ... [more]
ASPA_HELPJ2.246e-2240.00Aspartate ammonia-lyase OS=Helicobacter pylori J99... [more]
ASPA_HELPY5.004e-2239.33Aspartate ammonia-lyase OS=Helicobacter pylori GN=... [more]
ASPA_SERMA1.456e-2139.74Aspartate ammonia-lyase OS=Serratia marcescens GN=... [more]
ASPA_SHIFL9.437e-2143.31Aspartate ammonia-lyase OS=Shigella flexneri GN=as... [more]
ASPA_ECOLI9.437e-2143.31Aspartate ammonia-lyase OS=Escherichia coli (strai... [more]
ASPA_ECOL69.437e-2143.31Aspartate ammonia-lyase OS=Escherichia coli O6 GN=... [more]
ASPA_ECO579.437e-2143.31Aspartate ammonia-lyase OS=Escherichia coli O157:H... [more]
ASPA_PSEAE7.477e-1837.78Aspartate ammonia-lyase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionC34206A06EF PostHarveN Citrus clementina cDNA clone C34206A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932230 ID=FC932230; Name=FC932230; organism=Citrus clementina; type=EST; length=446bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAAATGGAAACAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGT
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