FC932230

Overview
NameFC932230
Unique NameFC932230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_DEIRA (Fumarate hydratase class II OS=Deinococcus radiodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.449e-39
Identity = 87/150 (58.00%), Postives = 107/150 (71.33%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RS+ NF IG +      P++RA GILKK AA+ N E G  PA +   I++AA EV  GKL++HFPLVV+QTGSGTQSNMNANEVI+NRA E+ G + G +K VHPNDHVNR QSSNDTFPT MHIA     N RL   +  L ++LH+K+
Sbjct:   28 RSIHNFPIGRDTFVWGRPVIRALGILKKGAAQANAELGELPADVADLIVKAADEVIAGKLDEHFPLVVFQTGSGTQSNMNANEVISNRAIELAGGEMGSKKPVHPNDHVNRGQSSNDTFPTAMHIAVVLELNERLYGAVGKLRDTLHAKA 177          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_RALSO (Fumarate hydratase class II OS=Ralstonia solanacearum GN=fumC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.505e-39
Identity = 85/150 (56.67%), Postives = 105/150 (70.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSLQNFDI G+R  MP  ++ A   +K+ +A VN   GL PA    A++ AA EV  GK    FPLVVWQTGSGTQSNMN NEV+ANRA+E+LG +RGE ++VHPND VNRSQSSND FPT MH+AA       L+P+L+ L  +L  K+
Sbjct:   27 RSLQNFDIAGDR--MPRELIDALARIKRASAAVNQRLGLLPADKANAVIAAADEVIAGKHPGEFPLVVWQTGSGTQSNMNMNEVLANRASELLGGERGEARLVHPNDDVNRSQSSNDVFPTAMHVAAVTAITRHLLPSLRALRETLARKA 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_RICFE (Fumarate hydratase class II OS=Rickettsia felis GN=fumC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.884e-39
Identity = 86/150 (57.33%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL+NF IG  +++MPE ++RA  ILKKCAA+VN E+G L+  I  +I +A   + EG+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L  K+G K  VHPNDHVN+ QSSND+FPT MHIA       +LIP L  L  SL  KS
Sbjct:   28 RSLENFKIG--KQKMPEILIRALAILKKCAAQVNYEFGDLEAKIATSIDKATDRILEGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTSKKGGKSPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTSLQDKS 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIN (Fumarate hydratase class II OS=Leptospira interrogans GN=fumC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 7.684e-39
Identity = 88/150 (58.67%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL +F IG +R   P  ++RA GILKK AA VN E GL      K I+QAA EV  GKL++HFPL VWQTGSGTQ+NMN+NEVI+NRA EI G  +G +K +HPND VN++QSSNDTFPT MHIAAA   N +LIP L  L  +   K+
Sbjct:   27 RSLHHFHIGNDR--FPREMIRALGILKKSAAVVNAELGLLSEDKKKLIVQAADEVISGKLDEHFPLSVWQTGSGTQTNMNSNEVISNRAIEIAGGVKGSKKPIHPNDDVNKAQSSNDTFPTAMHIAAAEQLNQKLIPALIQLKETFKKKT 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIC (Fumarate hydratase class II OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fumC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 7.684e-39
Identity = 88/150 (58.67%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL +F IG +R   P  ++RA GILKK AA VN E GL      K I+QAA EV  GKL++HFPL VWQTGSGTQ+NMN+NEVI+NRA EI G  +G +K +HPND VN++QSSNDTFPT MHIAAA   N +LIP L  L  +   K+
Sbjct:   27 RSLHHFHIGNDR--FPREMIRALGILKKSAAVVNAELGLLSEDKKKLIVQAADEVISGKLDEHFPLSVWQTGSGTQTNMNSNEVISNRAIEIAGGVKGSKKPIHPNDDVNKAQSSNDTFPTAMHIAAAEQLNQKLIPALIQLKETFKKKT 174          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_RICCN (Fumarate hydratase class II OS=Rickettsia conorii GN=fumC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.311e-38
Identity = 84/150 (56.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA-AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL+NF IG  +++MPE ++RA  ILKKCAA+VN E+G L+  I  +I +A   + EG+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A  E+ G K G+  VHPNDHVN+ QSSND+FPT MHIA       +LIP L  +  SL  KS
Sbjct:   28 RSLENFKIG--KQKMPEILIRALAILKKCAAQVNHEFGDLEAKIAISIDKATDRILEGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKSPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNILTSLQDKS 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_YERPE (Fumarate hydratase class II OS=Yersinia pestis GN=fumC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.712e-38
Identity = 83/150 (55.33%), Postives = 107/150 (71.33%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL +F I   +E+MP  ++ A  + K+ AA+VNM+ GL PA   KAIM+AA EV +G     FPL +WQTGSGTQ+NMN NEV+ANRA+E+LG  RG  ++VHPND VN+SQSSND FPT MH+AA  G +  L+P LKVL  +L  K+
Sbjct:   28 RSLAHFRIS--QEKMPTELIHALALTKRAAAQVNMDLGLLPAERAKAIMRAADEVLDGAHPTEFPLAIWQTGSGTQTNMNMNEVLANRASELLGGARGNNRLVHPNDDVNKSQSSNDVFPTAMHVAAVMGVSEHLLPELKVLQKTLADKA 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_SYNY3 (Fumarate hydratase class II OS=Synechocystis sp. (strain PCC 6803) GN=fumC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.236e-38
Identity = 86/150 (57.33%), Postives = 105/150 (70.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL  FDIG +   MP  ++RAF ILKK AA  N + G  PA   + I+ AA E+  G+  DHFPL +WQTGSGTQ+NMN NEVIANRA  I G + G K  +HPNDHVN SQSSNDTFPT MHIAA  G  ++LIP+L+ L +SL+ K+
Sbjct:   29 RSLMFFDIGSDV--MPPDLIRAFAILKKAAAITNQDLGKLPADKAELIITAADEIIAGQWLDHFPLRIWQTGSGTQTNMNVNEVIANRAIAICGGELGSKNPIHPNDHVNMSQSSNDTFPTAMHIAAVAGLQTKLIPSLQALRDSLNEKA 176          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_PHOLL (Fumarate hydratase class II OS=Photorhabdus luminescens subsp. laumondii GN=fumC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.236e-38
Identity = 83/150 (55.33%), Postives = 107/150 (71.33%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL++F I   +E+MP  ++ A  + K+ AA VNM+ GL P   G+AI+ AA+EV EGK    FPL +WQTGSGTQSNMN NEV+ANR +EILG  RG E+++HPND VN+SQSSND FPT MH+AA    +  LIP LK+L  +L  K+
Sbjct:   28 RSLEHFRIS--QEKMPVALIHALALTKQAAASVNMDLGLLPQERGEAIIAAAKEVLEGKHPTEFPLAIWQTGSGTQSNMNMNEVLANRGSEILGGVRGSERLIHPNDDVNKSQSSNDVFPTAMHVAAVIALSEHLIPELKILQKTLADKA 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_PSEPK (Fumarate hydratase class II OS=Pseudomonas putida (strain KT2440) GN=fumC-2 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.110e-37
Identity = 87/146 (59.59%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSL 432
            RSL NF IG  +ERMP  ++ A  ++KK AA+VN   G  PA I + I QAA EV +G+ +D FPLVVWQTGSGTQSNMN NEVIA RA E+ G  RG K  VHPNDHVNRSQSSND FPT MHIAAA   + +L+P +  L + L
Sbjct:   26 RSLINFAIG--KERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGKGRGGKAPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEKLLPAVTELSSGL 169          
The following BLAST results are available for this feature:
BLAST of FC932230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_DEIRA3.449e-3958.00Fumarate hydratase class II OS=Deinococcus radiodu... [more]
FUMC_RALSO4.505e-3956.67Fumarate hydratase class II OS=Ralstonia solanacea... [more]
FUMC_RICFE5.884e-3957.33Fumarate hydratase class II OS=Rickettsia felis GN... [more]
FUMC_LEPIN7.684e-3958.67Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_LEPIC7.684e-3958.67Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_RICCN1.311e-3856.00Fumarate hydratase class II OS=Rickettsia conorii ... [more]
FUMC_YERPE1.712e-3855.33Fumarate hydratase class II OS=Yersinia pestis GN=... [more]
FUMC_SYNY32.236e-3857.33Fumarate hydratase class II OS=Synechocystis sp. (... [more]
FUMC_PHOLL2.236e-3855.33Fumarate hydratase class II OS=Photorhabdus lumine... [more]
FUMC_PSEPK1.110e-3759.59Fumarate hydratase class II OS=Pseudomonas putida ... [more]

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Properties
Property NameValue
Genbank descriptionC34206A06EF PostHarveN Citrus clementina cDNA clone C34206A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932230 ID=FC932230; Name=FC932230; organism=Citrus clementina; type=EST; length=446bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAAATGGAAACAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGT
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