FC932230

Overview
NameFC932230
Unique NameFC932230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_BACHD (Fumarate hydratase class II OS=Bacillus halodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.893e-37
Identity = 83/149 (55.70%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RS +NF IG   E+MP  I+ AF +LKK AA VN + G L      AI  AA EV  GK +DHFPL VWQTGSGTQSNMN NEV+A R  ++L  K  +  +HPND VNRSQSSNDTFPT MHIAA N  +  L+P L++   +LH K+
Sbjct:   27 RSYENFHIG--TEKMPMEIIYAFALLKKAAANVNKKLGQLSAEKADAITWAANEVLAGKHDDHFPLFVWQTGSGTQSNMNMNEVLARRGNQLLQEKGLDVTIHPNDDVNRSQSSNDTFPTAMHIAAYNKLDDHLLPTLQMFKQTLHQKA 173          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_SALTY (Fumarate hydratase class II OS=Salmonella typhimurium GN=fumC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.217e-37
Identity = 85/150 (56.67%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL  A    AI+QAA EV  GK  D FPL +WQTGSGTQSNMN NEV+ANRA+EILG  RG E+ VHPND VN+SQSSND FPT MH+AA       LIP L  L ++L  KS
Sbjct:   28 RSLEHFRIS--TEKMPVSLIHALALTKRAAAKVNQDLGLLAAEKASAIIQAADEVLAGKHADEFPLAIWQTGSGTQSNMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALREHLIPQLSALTDTLRDKS 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_BACSU (Fumarate hydratase class II OS=Bacillus subtilis GN=fumC PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.217e-37
Identity = 80/149 (53.69%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RS +NF IG E+  MP  +V+AF ILK+  A  N   G LD    +AI     +V +GK +D+FPLVVWQTGSGTQSNMN NEV+ANRA  +L  K  ++ +HPND VNRSQSSNDTFPT MH+AA      +L+P L  L N+L  K+
Sbjct:   27 RSKENFKIGSEK--MPMRVVKAFAILKRSTALANKRLGNLDAEKAEAIAAVCDDVLKGKYDDNFPLVVWQTGSGTQSNMNMNEVVANRATALLKEKNSDQTIHPNDDVNRSQSSNDTFPTAMHVAAVLAVYEQLVPALDQLRNTLDEKA 173          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_ECOLI (Fumarate hydratase class II OS=Escherichia coli (strain K12) GN=fumC PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.507e-37
Identity = 83/150 (55.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA      +LIP LK L  +L+ KS
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKS 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_SALTI (Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 9.393e-37
Identity = 84/150 (56.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL  A    AI++AA EV  GK  D FPL +WQTGSGTQSNMN NEV+ANRA+EILG  RG E+ VHPND VN+SQSSND FPT MH+AA       LIP L  L ++L  KS
Sbjct:   28 RSLEHFRIS--TEKMPVSLIHALALTKRAAAKVNQDLGLLAAEKASAIIEAADEVLAGKHADEFPLAIWQTGSGTQSNMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALREHLIPQLSALTDTLRDKS 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_ECOL6 (Fumarate hydratase class II OS=Escherichia coli O6 GN=fumC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 9.393e-37
Identity = 83/150 (55.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA      +LIP LK L  +L  KS
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKS 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_ECO57 (Fumarate hydratase class II OS=Escherichia coli O157:H7 GN=fumC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 9.393e-37
Identity = 83/150 (55.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA      +LIP LK L  +L  KS
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKS 175          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_CAMJE (Fumarate hydratase class II OS=Campylobacter jejuni GN=fumC PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.602e-36
Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK-RGEKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSK 441
            RS +NF IG E+  MP+ ++ AF  LKK  A VN + G LD A   AI+QA  E+  GK +D+FPL +WQTGSGTQSNMN NEVIANRA EI+G   R EK+VHPNDHVN SQSSNDTFPT M I A      +LIP L  L  +   K
Sbjct:   27 RSFENFKIGCEK--MPKVLIYAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSNMNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLIPALDELIATFEKK 173          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_THEEB (Fumarate hydratase class II OS=Thermosynechococcus elongatus (strain BP-1) GN=fumC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.733e-36
Identity = 82/150 (54.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL++F IG +R  MP  ++ A   LKK AA  N + G LDP   K I+QAA EV  G+ +D FPL +WQTGSGTQ+NMN NEVIANRA E+ G  +G K  +HPNDHVN SQSSNDTFPT MH+A       RL+P L+ L   L  K+
Sbjct:   29 RSLKHFAIGSQR--MPLAVIHAMARLKKAAAIANRDLGVLDPEKAKWIIQAADEVIAGQWDDQFPLAIWQTGSGTQTNMNVNEVIANRAIELAGGVKGSKSPIHPNDHVNCSQSSNDTFPTAMHVATVLALQERLLPTLRHLLTVLQEKA 176          
BLAST of FC932230 vs. ExPASy Swiss-Prot
Match: FUMC_SHIFL (Fumarate hydratase class II OS=Shigella flexneri GN=fumC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.089e-36
Identity = 82/150 (54.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAANGNNSRLIPNLKVLHNSLHSKS 444
            RSL++F I    E+MP  ++ A  + K+ AAKVN +  L       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA      +LIP LK L  +L  KS
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLDLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLSEKS 175          
The following BLAST results are available for this feature:
BLAST of FC932230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_BACHD1.893e-3755.70Fumarate hydratase class II OS=Bacillus halodurans... [more]
FUMC_SALTY4.217e-3756.67Fumarate hydratase class II OS=Salmonella typhimur... [more]
FUMC_BACSU4.217e-3753.69Fumarate hydratase class II OS=Bacillus subtilis G... [more]
FUMC_ECOLI5.507e-3755.33Fumarate hydratase class II OS=Escherichia coli (s... [more]
FUMC_SALTI9.393e-3756.00Fumarate hydratase class II OS=Salmonella typhi GN... [more]
FUMC_ECOL69.393e-3755.33Fumarate hydratase class II OS=Escherichia coli O6... [more]
FUMC_ECO579.393e-3755.33Fumarate hydratase class II OS=Escherichia coli O1... [more]
FUMC_CAMJE1.602e-3657.05Fumarate hydratase class II OS=Campylobacter jejun... [more]
FUMC_THEEB2.733e-3654.67Fumarate hydratase class II OS=Thermosynechococcus... [more]
FUMC_SHIFL6.089e-3654.67Fumarate hydratase class II OS=Shigella flexneri G... [more]

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Properties
Property NameValue
Genbank descriptionC34206A06EF PostHarveN Citrus clementina cDNA clone C34206A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932230 ID=FC932230; Name=FC932230; organism=Citrus clementina; type=EST; length=446bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAAATGGAAACAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGT
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