FC932234

Overview
NameFC932234
Unique NameFC932234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 73/194 (37.63%), Postives = 104/194 (53.61%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 697
            RL FENS  +GVF   T+   L+  G  E         L   +PV++ S+  +RIIG L  GN N ++LP    D E++ ++ +L +  +   +     + +ALGN I  ND  AL      R+  + I ++LGVEV R  IAG   VGS    +N+GGLVHP TS E+L+ LS L +V +  GT N G   +G
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLIREGLQEKKLEVIRETLK--VPVIEVSVMKSRIIGTLATGNSNAIILPWYVWDAEIERIKKALSEYGIDMEVVPFRSKYTALGNLILTNDKAALVSAKFSRKEAQEIGEILGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFKVDVYVGTANMGVPYVG 196          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 74/195 (37.95%), Postives = 107/195 (54.87%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVV---VQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 700
            +L FENS  +GVF   T+   L+  G  E         L   +PVV+ S+  +RIIG L  GN N +++P    D EL+ ++N+  +  +   V   + + +ALGN I  ND  AL  +   RE  + I D+LGVEV R  IAG + VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   +G+
Sbjct:    5 KLDFENSPYLGVFGIATDKVVLIREGLQEKKLEVIREVLK--VPVVEASLMKSRIIGVLGAGNSNAIIVPWYVWDSELEKIKNAFREYGIDTEVVPFQTKYTALGNLILTNDKGALVSSKFSREEAKKIGDILGVEVERGVIAGIVAVGSAGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPYVGS 197          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 75/194 (38.66%), Postives = 103/194 (53.09%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 697
            RL FENS  +GVF   T+   LV  G  E         L   +PV++ SI  +RIIG L  GN N +L+P    D E++ ++++  +  +   I     + +ALGN I  ND  AL      R+  + I D+LGVEV R  IAG   VGS    +N+GGLVHP  S E+L+ LS L +V +  GT N G   +G
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVG 196          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 72/195 (36.92%), Postives = 103/195 (52.82%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE---ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 700
            +L FENS  +GV+   T+   L+  G  E         L   +P+++TSI  +RI+G    GN N +++P    D EL+H++N L +  +  RIE     L+A GN I  ND  AL      RE  + + D+LGVEV R  I     VGS    +NRGGLVHP  + E+L+ L  L +V +  GT N G   +G+
Sbjct:    5 KLDFENSPYLGVYGTATDRVALIREGLGEKKLEVLREVLK--VPLIETSIMKSRIVGVFAAGNSNAIVVPWYIWDAELEHIQNELNELDIDMRIEPFQSTLTAFGNLILANDKAALISVKFTREEAKKLEDILGVEVERGMIGDYHAVGSVGVVTNRGGLVHPEATDEELEWLRDLFKVDIYVGTANMGVPFVGS 197          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 70/195 (35.90%), Postives = 108/195 (55.38%), Query Frame = 2
Query:  116 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 700
            M  +   + +  +GV     +   +V+ G  +S+  + +  L   +P++KT I G+ + G L  GN NGLL+       EL  LR      + V+ + ++L+A+GN I  ND+ AL +  L  E + II + L VEV   +IAG  +VGS  + +NRG LVHP  S E+LD +  +L VP   GTVNRG +++GA
Sbjct:    1 MIQKFDIDGNPNLGVSILAKDNVAIVSPGLQDSYLKSIKETLN--VPIIKTPICGSNLAGALMAGNSNGLLISPYVFSHELDVLREH---DINVEIMPDKLTAIGNIIVANDNGALVNPSLSDEAKRIIKNTLEVEVVETSIAGLDIVGSLVAATNRGALVHPDASEEELDLVEDVLGVPAEIGTVNRGVKLVGA 190          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_THEGJ (Translation initiation factor 6 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 71/195 (36.41%), Postives = 102/195 (52.31%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 700
            RL FENS  +GV+   T+   ++  G  E   +T    L   +P+++TS+  +RI+G    GN N L++P    D EL  +   L +  +   +   + RL+A GN I  ND  AL   D  RE    I D+LGV V R  IA    VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   +G+
Sbjct:    5 RLDFENSPYLGVYGFATDRVAVIREGLGEKKLATLREVLK--VPLIETSVMKSRIVGIFVAGNSNALIVPWYIWDAELDFINAQLREYGIDMEVVPFQSRLTAFGNLILANDKGALVSKDFTREEARKIEDILGVPVERGVIADYTAVGSVGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPFVGS 197          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 72/196 (36.73%), Postives = 105/196 (53.57%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV-EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 700
            RL FENS  +GV+ + T+   L+  G  E         L   +P+++TSI  +RI+G    GN N +++P    D EL+ ++ +L +    + V   + RL+ALGN I  ND  AL   +  RE    I ++LGV EV R  IA    VGS    +N+GGLVHP  + E+L+ LS L  V +  GT N G   +G+
Sbjct:    5 RLDFENSPYLGVYGRATDRVLLLREGLGEKKLEVLREVLK--VPIIETSIMKSRIVGIFAAGNSNAIIVPWYIWDAELERIKTALNEFGIDMDVVPFKSRLTALGNLILTNDKAALVSKEFTREEANAIGEILGVDEVERGMIASYRSVGSVGVVTNKGGLVHPEATDEELEWLSDLFGVDIYVGTANMGVPFVGS 198          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 70/195 (35.90%), Postives = 108/195 (55.38%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIG-GSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            +L    +  +GV+   ++++ L     G++   +  E     +  VV+  + G R++G L  GN  G+LLP    D+E++ +R +L + V V  +  R +ALGN I CND   LA   L++E  + ++D LGVEV   ++AG   VGS    +NRGGL HP  S E+L  LS + +VP  AGT+N G E +  GL
Sbjct:   11 KLSLYGNPNIGVYLTASDSYVLAPDDIGADDVRTISEVLGVAMERVVRLRVLGMRLVGVLTTGNSRGILLPEGV-DREVELVRKAL-EGVEVGIVPTRSNALGNVIVCNDRACLASPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPDASEEELKFLSDVFKVPFEAGTINFGVEFVRTGL 203          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 67/185 (36.22%), Postives = 103/185 (55.68%), Query Frame = 2
Query:  152 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            +GVF+  T    LV         +  E  L   + VV+T I G+ ++G L  GN NG LLP+ ++ +E+Q  R  +P  +    + +RL+A+GN +  ND  AL H +L     EIIA  L VEV+R TIAG   VG     +N+G LVHP  ++ + + L  +  +P+  GT N G++++G+GL
Sbjct:   13 IGVFATCTEDLALVPPLTKPEVCTILEEALD--VRVVETLINGSTVVGALSRGNSNGFLLPYGSSVEEMQK-RTGVPAGI----LPDRLNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTVSEREALEEIFGLPVNIGTTNFGTQMLGSGL 190          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 64/185 (34.59%), Postives = 100/185 (54.05%), Query Frame = 2
Query:  152 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            +GVF+  T    +V IG +         +L   + V+ T I G+ ++G L  GN NG L+       +L+ +      +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R TIAG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ +G+GL
Sbjct:   13 LGVFATCTEDVAIVPIGTAGKAIDLLAEQLD--VKVISTLINGSIVVGSLSKGNSNGFLISRDANVSDLKDV------EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGL 189          
The following BLAST results are available for this feature:
BLAST of FC932234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_PYRHO6.545e-2737.63Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_PYRFU2.487e-2637.95Translation initiation factor 6 OS=Pyrococcus furi... [more]
IF6_PYRAB2.487e-2638.66Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_THEON5.540e-2636.92Translation initiation factor 6 OS=Thermococcus on... [more]
IF6_METST3.591e-2535.90Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_THEGJ8.000e-2536.41Translation initiation factor 6 OS=Thermococcus ga... [more]
IF6_PYRKO1.782e-2436.73Translation initiation factor 6 OS=Pyrococcus koda... [more]
IF6_AERPE2.328e-2435.90Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_METMA2.574e-2336.22Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METBU1.668e-2234.59Translation initiation factor 6 OS=Methanococcoide... [more]

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Properties
Property NameValue
Genbank descriptionC34206B02EF PostHarveN Citrus clementina cDNA clone C34206B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932234 ID=FC932234; Name=FC932234; organism=Citrus clementina; type=EST; length=708bp
GCTCCTTCAAACCCTAATATACTCAATTTATTCTTTTTCGTAAAACCCTC
ATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTC
TGTTAATTTGTAATCATGGCGACCAGACTTATGTTTGAGAATTCGTGTGA
GGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTG
GAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTT
ATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCT
TTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACC
AAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAG
CGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGA
CCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTA
TTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAAT
ATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCA
CCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAG
TACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCT
GGGTTAAC
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