FC932234

Overview
NameFC932234
Unique NameFC932234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15108 contig Ccv1_Contig15108:43..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 71/194 (36.60%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            R     S  VGVF+  T+ + LV     ES  S FE EL   +  V T+I G+  +G L VGN+NGLL+    TD+E   L       VV   +   ++A GN +  N+  A  H DL R+    I + L V V R  IA    VG+    ++ G L HP T+ E LD L  L  V    GT+N G  ++G+GL
Sbjct:    3 RAALSGSSYVGVFATATDEYLLVRPDIEESLQSEFETELD--VTAVPTTIAGSGTVGSLAVGNENGLLVTERVTDRERDRLETETGLPVV--ELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGTAAVVTDDGVLSHPKTTDEKLDFLEELFGVYADIGTINYGGPLVGSGL 192          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 64/185 (34.59%), Postives = 99/185 (53.51%), Query Frame = 2
Query:  152 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            +GVF+  T    LV  G      +  E  L     +V+T + G+ +IG L  GN NG L  + T   E++ L       V  + +  +L+A+GN +  ND  AL H +L  +  E+IA  L VEV+R TIAG   VG     +N+G LVHP  +  +++ L  L ++P+  GT N G++++G+GL
Sbjct:   13 IGVFATCTEDVVLVPTGTKPETCAILEDSLD--ARIVETLVNGSVVIGALSRGNSNGFLYSYGTDAGEMKELTG-----VEAEILPGKLNAVGNIVLANDSAALVHPELSDKAIEVIASTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEIETLEKLFELPVNIGTTNFGTQMLGSGL 190          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 66/195 (33.85%), Postives = 104/195 (53.33%), Query Frame = 2
Query:  116 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 700
            M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G L VGN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+A   L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +IGA
Sbjct:    1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGA 190          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  251 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            + VV+T++ G+ ++G L   N NG L P    + E++ +R      V V  +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +G G+
Sbjct:   45 VEVVRTTVAGSNLVGALLAVNSNGALFPRHAREHEIRVVREL---GVEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGI 193          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 62/191 (32.46%), Postives = 95/191 (49.74%), Query Frame = 2
Query:  134 FENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            F     +GVF+++     ++     E F +     L   + ++ T+I G+ IIG L  GN  GL++    TD+EL  L+        V  + E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++G GL
Sbjct:    7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDEELAVLKKHRK----VMLLCETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGL 191          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 67/194 (34.54%), Postives = 97/194 (50.00%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            R  F  S  VGVF++ T+   L+     +       AEL   IP V T+IGG+  +G L  GN+NG+L+    T +E + +  +    V V  +  R++A GN I  ND+ A  H DL  E  E I   L V V R  +A    VG+    +NRG L HP     +L+ +   L V    GTVN G+ ++G+G+
Sbjct:    3 RASFAGSPYVGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGTAAVATNRGVLCHPKAREPELEAIEDHLDVRADIGTVNYGAPLVGSGI 192          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 68/186 (36.56%), Postives = 96/186 (51.61%), Query Frame = 2
Query:  152 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNI-LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            +GV+    N   LV    +E      E  L   + V++T I    I G +  GN NGLLLP     +EL +LR  + D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS    +NRGG+VHP  S +++  L+++  V     TVN G   + AGL
Sbjct:   13 IGVYIYANNKIALVPPTLTEKDKKKIEETLG--VEVIETKIADMIINGVMIAGNDNGLLLPRIVKPEELDYLREHIGDKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGSMIVVTNRGGVVHPGVSDDEIRILNSVFGVEFTTATVNFGLYFVKAGL 196          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 62/197 (31.47%), Postives = 100/197 (50.76%), Query Frame = 2
Query:  116 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            M   L +E    +G+F+++     +V    S  + +  +  L   + +VKT + G+ IIG L  GN  G ++       E++    ++ +   V  +E  ++A GN I  ND +A  H D+D  T E I  VLGV V R T++G   VG     +NRG LVH  ++  +L  L +   +P+  GT+N GS ++G GL
Sbjct:    1 MIRTLAYEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIVSGLAYPDEIR----AIEEYREVMLLEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVGMAGYATNRGILVHARSAGRELATLESTTDLPVGTGTINMGSGLVGTGL 191          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 69/197 (35.03%), Postives = 107/197 (54.31%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            RL    +  +GV+    N + ++  G      S  +  +A V+   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE + R  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL
Sbjct:    5 RLSVFGTDNIGVYIYTNNKYTIIPRG----LDSETKENIAQVLGTELLEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEILNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGL 196          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 68/197 (34.52%), Postives = 106/197 (53.81%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGL 196          
The following BLAST results are available for this feature:
BLAST of FC932234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_NATPD2.179e-2236.60Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_METBF4.854e-2234.59Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METTH6.339e-2233.85Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_METKA1.081e-2136.18Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_METB62.409e-2132.46Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_HALWD2.409e-2134.54Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_HYPBU7.008e-2136.56Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_METPE9.153e-2131.47Translation initiation factor 6 OS=Methanosphaerul... [more]
IF6_SULSO2.663e-2035.03Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_SULIY3.478e-2034.52Translation initiation factor 6 OS=Sulfolobus isla... [more]

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Properties
Property NameValue
Genbank descriptionC34206B02EF PostHarveN Citrus clementina cDNA clone C34206B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932234 ID=FC932234; Name=FC932234; organism=Citrus clementina; type=EST; length=708bp
GCTCCTTCAAACCCTAATATACTCAATTTATTCTTTTTCGTAAAACCCTC
ATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTC
TGTTAATTTGTAATCATGGCGACCAGACTTATGTTTGAGAATTCGTGTGA
GGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTG
GAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTT
ATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCT
TTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACC
AAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAG
CGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGA
CCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTA
TTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAAT
ATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCA
CCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAG
TACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCT
GGGTTAAC
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