FC932234

Overview
NameFC932234
Unique NameFC932234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15108 contig Ccv1_Contig15108:43..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 64/197 (32.49%), Postives = 99/197 (50.25%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            RL    +  +GV+    N+  LV    S        AE  DV  +V+T I    + G L VGN NG++LP    D+EL  L N+L      + V R +   +ALGN + CN+   +A ++L+R+    I++ LGVE   + I    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL
Sbjct:    5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGL 197          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 60/185 (32.43%), Postives = 94/185 (50.81%), Query Frame = 2
Query:  152 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L  GN  GL++    TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++G GL
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGL 191          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 68/201 (33.83%), Postives = 108/201 (53.73%), Query Frame = 2
Query:  116 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGA 700
            M  R  F     +GV +  T    L+ I   +   +    E+++V+    ++T+IGG+ ++G L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   TIA    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  +GA
Sbjct:    3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGA 198          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 50/147 (34.01%), Postives = 83/147 (56.46%), Query Frame = 2
Query:  266 TSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            TS+   R++G L V N +G+++P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   IIAD LG+EV ++ IAG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   + +GL
Sbjct:   50 TSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGL 194          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  257 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            VV+T I  + +IG +  GN NG ++   T D+E     N L +   V R++ +++A GN I  ND  AL H  L  +  E I   L VEV R TI G   VG     +N+G LVHP  + E+L  L  L ++P+  GTV+ GS ++G+ +
Sbjct:   46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAI 191          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  125 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            R  F  S  VGVF++  +   LV     E        EL      + T++GG   +G L  GN+NG+L+    T++E   +  +   +V    +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +IG+GL
Sbjct:    3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEELG--AEPLLTTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGL 192          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 56/185 (30.27%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  152 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            +GV+    + F L+     E         L+  +   + S+ G R++G    GN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +A   L +   + IAD LGVE  + +I     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGL 196          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 58/199 (29.15%), Postives = 101/199 (50.75%), Query Frame = 2
Query:  110 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            VI  T +M   S  +G+++K  +    +     E   + F   L   + + + SI G+ +IG +   N NG++LP+ +    L  +     D   V  ++++++A+GN I  NDH A+ H     +  + I D LGVE  R +I   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA +
Sbjct:    3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASI 192          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 61/197 (30.96%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  116 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG +   N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  +GA +
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASI 191          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = 2
Query:  257 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V +  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGI 194          
The following BLAST results are available for this feature:
BLAST of FC932234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_STAMF2.493e-1832.49Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_METMJ2.493e-1832.43Translation initiation factor 6 OS=Methanoculleus ... [more]
IF6_METJA3.256e-1833.83Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_CENSY3.256e-1834.01Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_UNCMA4.252e-1837.33Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_HALLT4.252e-1830.93Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_THEPD9.472e-1830.27Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_THEVO1.237e-1729.15Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_PICTO2.110e-1730.96Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_PYRAE1.368e-1636.00Translation initiation factor 6 OS=Pyrobaculum aer... [more]

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Properties
Property NameValue
Genbank descriptionC34206B02EF PostHarveN Citrus clementina cDNA clone C34206B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932234 ID=FC932234; Name=FC932234; organism=Citrus clementina; type=EST; length=708bp
GCTCCTTCAAACCCTAATATACTCAATTTATTCTTTTTCGTAAAACCCTC
ATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTC
TGTTAATTTGTAATCATGGCGACCAGACTTATGTTTGAGAATTCGTGTGA
GGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTG
GAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTT
ATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCT
TTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACC
AAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAG
CGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGA
CCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTA
TTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAAT
ATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCA
CCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAG
TACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCT
GGGTTAAC
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