FC932234

Overview
NameFC932234
Unique NameFC932234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  251 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGA 700
            IP  + +I  + +IG LCVGN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGA 196          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 2
Query:  527 FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 706
            FR +IA N LVGSY   +N+G +VHP T  +D+DE+++LLQVP+VAGT+NRG+  IG+GL
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGL 63          
BLAST of FC932234 vs. ExPASy Swiss-Prot
Match: IF6_METS3 (Translation initiation factor 6 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eif6 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 54/195 (27.69%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  116 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 700
            M  R+   ++  +GVF   T+   +V     +      E  L   +  VK+SI G  +IG L V N NG+++     D+E++         + V  I    +A+GN +A ND  A+    L  E  ++I D L V V   ++ G+ ++GS  + +N+G L+  + +  ++D    +  V    GTV RG  ++GA
Sbjct:    1 MLRRINIVDNPNIGVFILATDDLAVVPYNLLDEKVKLIEETLE--VDAVKSSISGCNLIGSLAVANSNGIVVSPHVLDREVKQFEEL---GLNVATIPGNYTAVGNIVAANDTGAIVSPFLSDEAVKVIEDTLDVNVESTSMVGSDIIGSLITVTNKGFLMDKNATETEVDFARDVFGVEGDIGTVGRGISLVGA 190          
The following BLAST results are available for this feature:
BLAST of FC932234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METM54.400e-1535.71Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_TRYCR8.298e-1458.33Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_METS31.415e-1327.69Translation initiation factor 6 OS=Methanobrevibac... [more]

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Properties
Property NameValue
Genbank descriptionC34206B02EF PostHarveN Citrus clementina cDNA clone C34206B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932234 ID=FC932234; Name=FC932234; organism=Citrus clementina; type=EST; length=708bp
GCTCCTTCAAACCCTAATATACTCAATTTATTCTTTTTCGTAAAACCCTC
ATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTC
TGTTAATTTGTAATCATGGCGACCAGACTTATGTTTGAGAATTCGTGTGA
GGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTG
GAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTT
ATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCT
TTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACC
AAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAG
CGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGA
CCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTA
TTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAAT
ATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCA
CCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAG
TACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCT
GGGTTAAC
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