FC932235

Overview
NameFC932235
Unique NameFC932235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2354 contig Ccv1_Contig2354:37..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_HUMAN (4-hydroxyphenylpyruvate dioxygenase OS=Homo sapiens GN=HPD PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 72/190 (37.89%), Postives = 98/190 (51.58%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVSYKDKANHL-DFLPGFEPT---DEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDI 666
            HG   + IA EVED D     +   GAK    P V  D    +  A +Q YGD     V   +K N++  FLPG+E     D +        +  +DH VGN P  E+  A  +      FH F       V T  S L S+V+AN +E + +P+NEP  G K+KS+IQ Y+++N GAGVQH+AL +EDI
Sbjct:   89 HGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTEDI 274          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_RAT (4-hydroxyphenylpyruvate dioxygenase OS=Rattus norvegicus GN=Hpd PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.433e-20
Identity = 73/193 (37.82%), Postives = 100/193 (51.81%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYVSYKDKANHLD-FLPGFE-PTDEISSFPL--DYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            HG   + IA EVED +     +   GAK    P + ++       A +Q YGD     V   +K N+   FLPGFE PT + +  P      +  +DH VGN P  E+  A  +      FH F       V T  S L S+V+AN +E + +P+NEP  G K KS+IQ Y+++N GAGVQH+AL +EDI  T
Sbjct:   89 HGDGVKDIAFEVEDCEHIVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEAPTYKDTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGRK-KSQIQEYVDYNGGAGVQHIALRTEDIITT 277          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_MOUSE (4-hydroxyphenylpyruvate dioxygenase OS=Mus musculus GN=Hpd PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 74/190 (38.95%), Postives = 98/190 (51.58%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVSYKDKANHLD-FLPGFE-PTDEISSFPL--DYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDI 666
            HG   + IA EVED D     +   GAK    P V  D    +  A +Q YGD     V   +K N+   FLPGFE PT + +  P      +  +DH VGN P  E+  A  +      FH F       V T  S L S+V+ N +E + +P+NEP  G K KS+IQ Y+++N GAGVQH+AL +EDI
Sbjct:   89 HGDGVKDIAFEVEDCDHIVQKARERGAKIVREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEAPTYKDTLLPKLPRCNLEIIDHIVGNQPDQEMQSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVTNYEESIKMPINEPAPGRK-KSQIQEYVDYNGGAGVQHIALKTEDI 274          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_STRCO (4-hydroxyphenylpyruvate dioxygenase OS=Streptomyces coelicolor GN=hpd PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 64/191 (33.51%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  118 ASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            A HG     +A+EV DA  A   +V HGA+  + P  + +     V+A +  YG+   R+   +       +LPG+     + + P     + +DH VGNV    +   V +     GF    EF  +D+ T  S L S V+A+    V  P+NEP    K+KS+I  YLE   GAGVQH+AL + DI  T
Sbjct:   94 AEHGDGVVDLAIEVPDARAAHAYAVEHGARSLAEPHEVKDEHGTVVLAAIATYGET--RHTLVERTGYDGPYLPGYVAAKPMVAPPAQRVFQAVDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKFPINEPAI-AKKKSQIDEYLEFYGGAGVQHIALNTNDIVAT 281          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_STRAW (4-hydroxyphenylpyruvate dioxygenase OS=Streptomyces avermitilis GN=hpd PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 65/191 (34.03%), Postives = 90/191 (47.12%), Query Frame = 1
Query:  118 ASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            A HG     +A+EV DA  A   ++ HGA+  + P  L +     V+A +  YG    R+           +LPG+     I   P     + +DH VGNV    +   V +     GF    EF  +D+ T  S L S V+A+    V  P+NEP    K+KS+I  YLE   GAGVQH+AL + DI  T
Sbjct:   94 AEHGDGVVDLAIEVPDARAAHAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGKT--RHTLVDRTGYDGPYLPGYVAAAPIVEPPAHRTFQAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKFPINEPAL-AKKKSQIDEYLEFYGGAGVQHIALNTGDIVET 281          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_XENTR (4-hydroxyphenylpyruvate dioxygenase OS=Xenopus tropicalis GN=hpd PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 66/191 (34.55%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGF-EPTDEISSFP-LDYG-IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFR 672
            HG   + +A +VED D  F  +  HGA     P I ++       A +Q YGD     + Y      + FLPG+ EP       P L  G +  +DH VGN P  E+ P V + +    FH F     + + T  S L S+V+ N +E + +P+NEP  G K+KS+IQ Y+++   AGVQH+AL + +I +
Sbjct:   89 HGDGVKDVAFQVEDCDFLFQKAKDHGAVVVREPWIEEDEGGKVKYAVLQTYGDTTHTLLEYLGPYRGV-FLPGYKEPLFRDPLLPTLPSGCLSFIDHIVGNQPDNEMVPIVEWYQKCLLFHRFWSVDDKQIHTEYSSLRSIVVTNYEETIKMPINEPAAG-KKKSQIQEYVDYYGSAGVQHIALNTSNIIK 277          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_MYCGR (4-hydroxyphenylpyruvate dioxygenase OS=Mycosphaerella graminicola GN=HPPD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 61/189 (32.28%), Postives = 99/189 (52.38%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVI--LDNLAVI-AEVQLYGDVVLRYVSYKDKANHLDFLPGFEP---TDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDI 666
            HG   + +A EV+D    +  +VA+GA+  S P     D   VI A ++ YGD    ++          FLPG+      D  + F     +  +DH VGN    E++ A  + +   GFH F     +D+ T  S L S+V+++ +++V +P+NEP  G K+KS+I+ Y++   G GVQH+AL + +I
Sbjct:  127 HGDGVKDVAFEVDDVLAVYENAVANGAESVSSPHTDSCDEGDVISAAIKTYGDTTHTFIQRTTYTG--PFLPGYRSCTTVDSANKFLPPVNLEAIDHCVGNQDWDEMSDACDFYERCLGFHRFWSVDDKDICTEFSALKSIVMSSPNQVVKMPINEPAHG-KKKSQIEEYVDFYNGPGVQHIALRTPNI 312          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_DANRE (4-hydroxyphenylpyruvate dioxygenase OS=Danio rerio GN=hpd PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLA---VIAEVQLYGDVVLRYVSYKDKANHLDFLPGF-EPTDEISSFP-LDYG-IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFR 672
            HG   + +A  VED D     +   GA     P +  +       A VQ YGD    +V Y      L FLPG+ EP       P L  G +  +DH VGN P  E+ P   + +    FH F     + + T  S L S+V+ N +E + +P+NEP  G K+KS+IQ Y+++N G GVQH+AL + +I +
Sbjct:   89 HGDGVKDVAFLVEDCDFLVKKAKERGAAVLKEPWVEQDAGGKVKYAIVQTYGDTTHTFVEYLGPYKGL-FLPGYKEPLFRDPLLPKLPSGHLSFIDHIVGNQPDDEMVPVSDWYQKCLLFHRFWSIDDKQIHTEYSALRSIVVTNYEETIKMPINEPAMG-KKKSQIQEYIDYNGGPGVQHIALNTSNIIQ 277          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_DICDI (4-hydroxyphenylpyruvate dioxygenase OS=Dictyostelium discoideum GN=hpd PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 63/191 (32.98%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKP-SSPPVILDNLAVIAEVQL---YGDVVLRYVSYKDKANHLD-FLPGFE---PTDEISSFPLDYGIRRLDHAVGNVPE--LAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDI 666
            HG   + IA  V+D    ++ +V  GA+    P  I D   ++    +   YG+    +V   D++ +   FLPGF     +D +S+     G+  +DH V N  +  + P V + +    FH F     + + T  S L SVV+A+  E V LP+NEP  G  RKS+IQ Y++   GAGVQH+AL +++I
Sbjct:   74 HGDGVKDIAFNVKDVQHIYDEAVKAGAQSVKEPHQIKDEHGIVTLATIMSPYGETTHTFV---DRSQYKGAFLPGFTYKVASDPLSNITEPVGLNLIDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEYSSLRSVVVADKSEKVKLPINEPANGI-RKSQIQEYVDFYNGAGVQHIALKTDNI 260          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD2_ASPFU (Probable 4-hydroxyphenylpyruvate dioxygenase 2 OS=Aspergillus fumigatus GN=AFUA_4G10620 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  124 HGLAARSIAVEVE-DADVAFNTSVAHGAKPSSPPVILDN----LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPT---DEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGT--SESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDI 666
            HG   + +A  +E D +  +  +V HGA P + P  L +       +A +  Y D V   ++  D +    FLPG+E     D I+          +DH VGN P   + P V Y +    FH +  +T +D+      S + S+V+A+ +E++ +PMNEP  G K+KS+I+ ++ +  GAGVQH+A  + DI
Sbjct:  112 HGDGVKDVAFRIEGDIEAVWKRAVDHGAAPVAAPTTLKDDRHGSITLATIGTYEDTVHSLINRHDYSG--PFLPGYEVVTDDDPINRLLPSIDFIEIDHCVGNQPWNGVDPIVKYYEDCLNFHRY--WTVDDLNMCGEYSAMRSIVVASPNEVIKMPMNEPAQG-KKKSQIEEFVNYYNGAGVQHIAFRTHDI 299          
The following BLAST results are available for this feature:
BLAST of FC932235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
HPPD_HUMAN8.403e-2137.894-hydroxyphenylpyruvate dioxygenase OS=Homo sapien... [more]
HPPD_RAT1.433e-2037.824-hydroxyphenylpyruvate dioxygenase OS=Rattus norv... [more]
HPPD_MOUSE7.114e-2038.954-hydroxyphenylpyruvate dioxygenase OS=Mus musculu... [more]
HPPD_STRCO6.022e-1933.514-hydroxyphenylpyruvate dioxygenase OS=Streptomyce... [more]
HPPD_STRAW6.022e-1934.034-hydroxyphenylpyruvate dioxygenase OS=Streptomyce... [more]
HPPD_XENTR7.865e-1934.554-hydroxyphenylpyruvate dioxygenase OS=Xenopus tro... [more]
HPPD_MYCGR1.027e-1832.284-hydroxyphenylpyruvate dioxygenase OS=Mycosphaere... [more]
HPPD_DANRE1.027e-1834.554-hydroxyphenylpyruvate dioxygenase OS=Danio rerio... [more]
HPPD_DICDI1.483e-1732.984-hydroxyphenylpyruvate dioxygenase OS=Dictyosteli... [more]
HPPD2_ASPFU1.937e-1731.61Probable 4-hydroxyphenylpyruvate dioxygenase 2 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206B03EF PostHarveN Citrus clementina cDNA clone C34206B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932235 ID=FC932235; Name=FC932235; organism=Citrus clementina; type=EST; length=675bp
GACCTCCGTTTCGTCTTTACGGCGCCGTATTCCCCTTCAATCTCCGACGC
CGCCGATGCTGGCAACTCCTCAGCATCTCTCCCGACTTTCGACCACGCAG
CTTGCCGCAGTTTCGCCGCGTCTCATGGGCTCGCCGCGCGGTCGATTGCT
GTTGAAGTTGAAGACGCCGACGTTGCTTTCAACACCAGCGTGGCTCACGG
TGCTAAGCCCTCCTCTCCTCCTGTGATTCTCGATAACCTTGCTGTGATTG
CCGAGGTCCAGTTATACGGCGACGTCGTTTTGCGTTATGTTAGTTATAAA
GATAAAGCGAATCATCTTGATTTCCTGCCGGGTTTCGAACCGACGGATGA
GATTTCATCGTTTCCGTTGGATTACGGAATCAGGCGGCTCGATCACGCCG
TCGGCAACGTTCCGGAACTCGCTCCGGCTGTTGCTTATGTGAAATCATTC
ACTGGGTTTCACGAGTTCGCCGAGTTCACAGCCGAAGACGTCGGCACGAG
TGAGAGTGGACTCAACTCAGTGGTGTTAGCAAACAACGATGAAATGGTAT
TGCTCCCGATGAACGAGCCCGTGTTTGGGACGAAGCGTAAGAGTCGGATA
CAGACCTATCTGGAGCACAATGAGGGAGCTGGCGTGCAGCACTTGGCTCT
TGTGAGTGAGGACATTTTTAGGACT
back to top