FC932250

Overview
NameFC932250
Unique NameFC932250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932250_ssr122 microsatellite FC932250_ssr122:122..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14196 contig Ccv1_Contig14196:36..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y855_MYCLE (Uncharacterized zinc protease ML0855 OS=Mycobacterium leprae GN=ML0855 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  341 TLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQN 649
            TLP GLRV TE   A ++A+VGVW+  GSR E     G AHFLEH++FK T  RTA D+ + I+ +GG LNA+T++E T YYA VLD D++ A+D++AD++ N
Sbjct:   26 TLPGGLRVVTEHLPAVRSASVGVWVGVGSRDEGATVAGAAHFLEHLLFKSTSTRTAMDIAQAIDAVGGELNAFTAKEHTCYYAHVLDSDLELAVDLVADVVLN 128          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y338_RICFE (Uncharacterized zinc protease RF_0338 OS=Rickettsia felis GN=RF_0338 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  335 IATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTF 658
            I+ L NGL V T +     +  + +    GSR+E  E  G +HFLEHM FKGT  RTA+ + EE + +GGH NAYT  E+T YYA+VL ++   AL+ILADI+QNS F
Sbjct:    7 ISKLKNGLTVLTYNMPYVDSVAINLITKVGSRYENSEEEGISHFLEHMAFKGTTTRTAKQIAEEFDEIGGHFNAYTGHEKTIYYARVLSENCDKALNILADIIQNSIF 114          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y2805_MYCBO (Uncharacterized zinc protease Mb2805c OS=Mycobacterium bovis GN=Mb2805c PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  317 AAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQN 649
            AA   +  TLP GLRV TE   A  +A+VGVW+  GSR E     G AHFLEH++FK T  R+A D+ + ++ +GG LNA+T++E T YYA VL  D+  A+D++AD++ N
Sbjct:   11 AALAPRRTTLPGGLRVVTEFLPAVHSASVGVWVGVGSRDEGATVAGAAHFLEHLLFKSTPTRSAVDIAQAMDAVGGELNAFTAKEHTCYYAHVLGSDLPLAVDLVADVVLN 121          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y2782_MYCTU (Uncharacterized zinc protease Rv2782c/MT2852 OS=Mycobacterium tuberculosis GN=Rv2782c PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  317 AAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQN 649
            AA   +  TLP GLRV TE   A  +A+VGVW+  GSR E     G AHFLEH++FK T  R+A D+ + ++ +GG LNA+T++E T YYA VL  D+  A+D++AD++ N
Sbjct:   11 AALAPRRTTLPGGLRVVTEFLPAVHSASVGVWVGVGSRDEGATVAGAAHFLEHLLFKSTPTRSAVDIAQAMDAVGGELNAFTAKEHTCYYAHVLGSDLPLAVDLVADVVLN 121          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y219_RICPR (Uncharacterized zinc protease RP219 OS=Rickettsia prowazekii GN=RP219 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  335 IATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTF 658
            ++ L NGL + T +     +  + +    G+R+E +E  G +HFLEHM FKGT+ RTA+ + EE +++GG+ NAYT  E T YYA+VL ++   AL+ILADI+QNS F
Sbjct:    7 VSKLKNGLTILTYNMPYVHSVAINLIAKVGARYENEEEEGISHFLEHMAFKGTKTRTAQQIAEEFDSIGGYFNAYTGHENTVYYARVLSENCHKALNILADIIQNSIF 114          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y522_RICBR (Uncharacterized zinc protease RBE_0522 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0522 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  335 IATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTF 658
            ++ L NGL + T +     +  + +    GSR+E     G AHFLEHM FKGT+ RTA+ + EE +++GGH NAYT  E+T YY++VL ++   AL I+ADI+QNS F
Sbjct:    7 VSKLKNGLTILTYNMPYVNSVAINLIAKVGSRYENPGEEGIAHFLEHMAFKGTKTRTAKQIAEEFDSIGGHFNAYTGHEKTVYYSRVLSENCNKALAIIADIVQNSAF 114          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y293_RICCN (Uncharacterized zinc protease RC0293 OS=Rickettsia conorii GN=RC0293 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.715e-22
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  335 IATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTF 658
            ++ L NGL + T +     +  + +    G+R+E  E +G +HFLEHM FKGT+ RTA+ + E  + +GGH NAYT  E T YYA+VL ++   AL+ILADI+QNS F
Sbjct:    7 VSKLKNGLTILTYNMPYVNSVAINLIAKVGARYENAEEDGISHFLEHMAFKGTKTRTAKQIAEAFDAIGGHFNAYTGHENTVYYARVLSENCDKALNILADIIQNSIF 114          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: Y210_RICTY (Uncharacterized zinc protease RT0210 OS=Rickettsia typhi GN=RT0210 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  335 IATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTF 658
            I+ L NGL + T +     +  + +    G+R+E +E  G +HFLEHM FKGT+ RTA+ + EE +++GG+ NAYT  E T YY +VL ++   AL+ILADI+QNS F
Sbjct:    7 ISKLKNGLTILTYNMPYVHSVAINLIAKVGARYENEEEEGISHFLEHMAFKGTKTRTAQQIAEEFDSIGGYFNAYTGYENTVYYVRVLSENCHKALNILADIIQNSIF 114          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 41/105 (39.05%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  335 IATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQN 649
            I TL NG+RVA+E +L    + VGV+IDAGSR+E D   G +H ++ + FK T  RTA ++ E +E +GG++   +SRE   Y A   +K +  A++++A+ +++
Sbjct:   54 ITTLSNGVRVASE-DLPDAFSGVGVYIDAGSRYENDYVRGASHIMDRLAFKSTSTRTADEMLETVEKLGGNIQCASSRESMMYQAATFNKAIPTAVELMAETIRD 157          
BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 2
Query:  287 PTLTSHTHILAAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILADILQNSTF 658
            P L+ H       + K  TLPNGL +ATE +     A++G+++D GS +ET +  G  H LE M FK T  R+   L  EIE +GG+ +A  SREQ  Y    L   V   +++L D ++N  F
Sbjct:   63 PPLSDHVE---PSKLKTTTLPNGLTIATEMS-PNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAF 182          
The following BLAST results are available for this feature:
BLAST of FC932250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
Y855_MYCLE1.898e-2552.43Uncharacterized zinc protease ML0855 OS=Mycobacter... [more]
Y338_RICFE3.031e-2349.07Uncharacterized zinc protease RF_0338 OS=Rickettsi... [more]
Y2805_MYCBO5.169e-2347.75Uncharacterized zinc protease Mb2805c OS=Mycobacte... [more]
Y2782_MYCTU5.169e-2347.75Uncharacterized zinc protease Rv2782c/MT2852 OS=My... [more]
Y219_RICPR1.964e-2245.37Uncharacterized zinc protease RP219 OS=Rickettsia ... [more]
Y522_RICBR3.351e-2245.37Uncharacterized zinc protease RBE_0522 OS=Ricketts... [more]
Y293_RICCN5.715e-2245.37Uncharacterized zinc protease RC0293 OS=Rickettsia... [more]
Y210_RICTY7.465e-2245.37Uncharacterized zinc protease RT0210 OS=Rickettsia... [more]
MPPA_NEUCR4.686e-1639.05Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA2_ARATH8.838e-1537.90Probable mitochondrial-processing peptidase subuni... [more]

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Properties
Property NameValue
Genbank descriptionC34206D02EF PostHarveN Citrus clementina cDNA clone C34206D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932250 ID=FC932250; Name=FC932250; organism=Citrus clementina; type=EST; length=672bp
GGTGAAAAGGAAACTCGAGACTTATCATCAGTGAGTCCAAACGATGGCGT
TTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCACAGGCCTTCGTCCACG
GCCCTCTTTACCGCCATCCGATCCTCCTCCTCCGCCTCACCCCTCGCCAC
GTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCCCCAAATGTCATGATCT
ACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCTCAAAAACCTAGAAAAC
CCCGACCCGAAGTTCTTAAAGTACGGATCCCCGCACCCAACCCTTACTTC
CCACACGCACATCCTCGCTGCGCCGGAGACCAAAATCGCGACTTTGCCTA
ACGGACTCCGCGTCGCCACCGAGTCGAACCTCGCCGCGAAGACGGCCACA
GTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCGAGACTGATGAGACGAA
CGGGACGGCTCATTTCTTGGAGCATATGATATTCAAGGGGACGGAGAAGC
GGACTGCGAGAGATTTGGAGGAGGAGATCGAGAATATGGGGGGGCATTTG
AATGCTTACACTAGCAGGGAACAGACGACCTATTATGCCAAGGTGTTGGA
TAAGGATGTGAAATATGCTTTGGATATTTTGGCAGATATTTTGCAGAACT
CGACGTTTGATCAAGCGAGGAT
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