FC932250

Overview
NameFC932250
Unique NameFC932250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932250_ssr122 microsatellite FC932250_ssr122:122..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14196 contig Ccv1_Contig14196:36..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC932250 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 2 
Query:  317 AAPETKIATLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVKYALDILAD 637
            AA  T +  LP+G+RVAT  +  +  A VGV++DAG  +ET    G +HF+  + FK T   T   + + +  +GG+L    +RE   Y   VL  D+   + +LAD
Sbjct:   11 AARSTCMTRLPSGIRVATAPS-NSHFAAVGVYVDAGPIYETSIDRGVSHFVSSLAFKSTHGATESQVLKTMAGLGGNLFCTATRESILYQGSVLHHDLPRTVQLLAD 116
The following BLAST results are available for this feature:
BLAST of FC932250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MPPA_BLAEM4.539e-1135.51Mitochondrial-processing peptidase subunit alpha O... [more]

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Properties
Property NameValue
Genbank descriptionC34206D02EF PostHarveN Citrus clementina cDNA clone C34206D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932250 ID=FC932250; Name=FC932250; organism=Citrus clementina; type=EST; length=672bp
GGTGAAAAGGAAACTCGAGACTTATCATCAGTGAGTCCAAACGATGGCGT
TTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCACAGGCCTTCGTCCACG
GCCCTCTTTACCGCCATCCGATCCTCCTCCTCCGCCTCACCCCTCGCCAC
GTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCCCCAAATGTCATGATCT
ACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCTCAAAAACCTAGAAAAC
CCCGACCCGAAGTTCTTAAAGTACGGATCCCCGCACCCAACCCTTACTTC
CCACACGCACATCCTCGCTGCGCCGGAGACCAAAATCGCGACTTTGCCTA
ACGGACTCCGCGTCGCCACCGAGTCGAACCTCGCCGCGAAGACGGCCACA
GTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCGAGACTGATGAGACGAA
CGGGACGGCTCATTTCTTGGAGCATATGATATTCAAGGGGACGGAGAAGC
GGACTGCGAGAGATTTGGAGGAGGAGATCGAGAATATGGGGGGGCATTTG
AATGCTTACACTAGCAGGGAACAGACGACCTATTATGCCAAGGTGTTGGA
TAAGGATGTGAAATATGCTTTGGATATTTTGGCAGATATTTTGCAGAACT
CGACGTTTGATCAAGCGAGGAT
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