FC932254

Overview
NameFC932254
Unique NameFC932254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4207 contig Ccv1_Contig4207:24..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  349 PKEVTEIDN-------LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            P  V E DN       LK+ LVD+ YG+D G  A+SE R E++EL+TQLEA NPTP P +A  LL   WIL+YT++S L P+L+ G  PL +V+EISQ ID+ + T+      + P A+ S
Sbjct:  133 PPPVPEEDNEEERREELKRCLVDTVYGSDLGFRASSEVRGEVLELVTQLEATNPTPEPVQATHLLAGNWILIYTAYSELLPILAVGAAPLFKVDEISQEIDTNSMTIVNASTISSPFASFS 253          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP3_ARATH (Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  376 LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            LK+ L DS YGT+ G  A SE RAE++EL+ QLEA NPTPAP E   LL+  W+L+YT+FS L PLL+ G+ PL +V+ ISQ+ID+ N  +      + P A  S
Sbjct:  153 LKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAFSELIPLLAAGSTPLLKVKSISQSIDTNNLIIDNSTTLSSPFADFS 257          
BLAST of FC932254 vs. ExPASy Swiss-Prot
Match: PAP3_BRACM (Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  376 LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQKLIRFAGPLATTS 690
            LK+ L D+ YGT+ G  A SE RAE++E++ QLEA NPT AP E   LL+  W+L+YT+FS L PLL+ G+ PL +V+ ISQ+ID+++ ++      + P A  S
Sbjct:  137 LKRCLADTVYGTELGFRAGSEVRAEVLEIVNQLEALNPTQAPVENPELLDGNWVLLYTAFSELLPLLAAGSTPLLKVKSISQSIDTKSLSIDNSTTLSSPFADFS 241          
The following BLAST results are available for this feature:
BLAST of FC932254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP3_ORYSJ3.808e-2447.11Probable plastid-lipid-associated protein 3, chlor... [more]
PAP3_ARATH1.890e-2350.48Probable plastid-lipid-associated protein 3, chlor... [more]
PAP3_BRACM7.940e-2246.67Plastid lipid-associated protein 3, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC34206D06EF PostHarveN Citrus clementina cDNA clone C34206D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932254 ID=FC932254; Name=FC932254; organism=Citrus clementina; type=EST; length=692bp
ATTGAAATTGGTTTCTCTGTTTTTCTAGTTCCTCTGTTGGTGAAAACTGT
GTGTTGTAACTGTGTGTTTTTGGAAAAGCTAATGGCTTCAATATCTCAAA
CCAACCAGTTCCCGTGCAAGACTCTTTCACAAAACCCACCACACAATCAG
TTCACCTCGAAGCCTTCAATTCTCCCTTTGAACTCGGTTCGAATTTCACG
GAGTCTCGCCAAGAAATCATTTCTTTCAATCCAAGGATTCACTCGGGCCA
GGCCGCTGGTTCTAACTCGGGCTGCCGATGATGATGAGTGGGGCCCGGAG
AAGGAGAAGGAGGAAGGTGGCGCTCTGGCGGTGGCAGAGGAGGAGAGCCC
AAAAGAAGTTACAGAGATTGATAATTTGAAGAAAGCGCTTGTGGATTCGT
TTTATGGGACCGATCGTGGATTGAATGCCACAAGTGAGACGAGGGCTGAG
ATCGTTGAGCTTATTACGCAGCTTGAGGCTAAGAATCCAACCCCGGCTCC
CACCGAGGCCTTAACTCTGCTAAATGCCAAATGGATTCTTGTGTACACAT
CTTTTTCAGGTTTGTTTCCGTTGTTGTCAAGGGGAACATTGCCATTGGCG
AGGGTGGAGGAGATATCTCAGACAATTGACTCAGAGAACTTCACGGTCCA
GAAACTCATCCGGTTTGCTGGGCCATTGGCTACAACTTCCAT
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