FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..379. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMH_YEAST (Fumarate hydratase, mitochondrial OS=Saccharomyces cerevisiae GN=FUM1 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 2.254e-47
Identity = 97/127 (76.38%), Postives = 105/127 (82.68%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RS QNF IGG RERMP P+V AFG+LKK AA VN   G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSGTQSNMNANEVI+NRA EILG K G K VHPN+H N+SQSSNDTFPTVMHIAA+
Sbjct:   52 RSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAAS 178          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMH_DICDI (Fumarate hydratase, mitochondrial OS=Dictyostelium discoideum GN=fumH PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.252e-46
Identity = 92/128 (71.88%), Postives = 107/128 (83.59%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR--GEKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL+NFDIGGE E+MP  +VR+FGILK+CAA VN +YGLD  I   I +AA EV EGKL+D FPLVV+QTGSGTQSNMNANEVI+NRA E++  KR   +K+VHPNDHVN+SQSSNDTFPT MHIAAA
Sbjct:   47 RSLENFDIGGESEKMPLMVVRSFGILKRCAAIVNKKYGLDATIADNIAKAATEVVEGKLDDQFPLVVFQTGSGTQSNMNANEVISNRAIELMTGKRDFSKKLVHPNDHVNKSQSSNDTFPTCMHIAAA 174          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMH_CAEEL (Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.047e-44
Identity = 89/125 (71.20%), Postives = 99/125 (79.20%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS  NF IGG  ERMP P++ AFGILKK AA VN E+GLD  +  AI QAA EV +GKL++HFPLV WQTGSGTQSNMN NEVI+NRA EILG + G +K VHPNDHVN SQSSNDTFPT MHIA
Sbjct:   65 RSQMNFKIGGPEERMPIPVIHAFGILKKAAALVNTEFGLDKKLADAISQAADEVVDGKLDEHFPLVTWQTGSGTQSNMNVNEVISNRAIEILGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIA 189          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_THET2 (Fumarate hydratase class II OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=fumC PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.579e-43
Identity = 87/127 (68.50%), Postives = 103/127 (81.10%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL+NF IG +R RMP  I+RA+G+LKK AA+ N+E G L   I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG   G K VHPNDHVNR QSSNDTFPT M++A A
Sbjct:   27 RSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYVHPNDHVNRGQSSNDTFPTAMYVAVA 153          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_RHILO (Fumarate hydratase class II OS=Rhizobium loti GN=fumC PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.369e-43
Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL NF IG E++  P  IVRA G++K+ AA+VNME   LDP +GKAI+ AAQEV +GKLNDHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG   G +K VHPNDHVN SQSSNDT+PT MHIA A
Sbjct:   30 RSLGNFKIGWEKQ--PASIVRALGVVKRAAAEVNMEMKRLDPVVGKAIVDAAQEVIDGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACA 155          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BRUSU (Fumarate hydratase class II OS=Brucella suis GN=fumC PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.725e-42
Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSLQNF IGGER  MP P+V A G++K+ AA+ N+  G LDP +G+ I  AA EV EGKL+DHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K +HPNDHVN SQSSND+FPT +HIA A
Sbjct:   28 RSLQNFRIGGER--MPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATA 153          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BRUME (Fumarate hydratase class II OS=Brucella melitensis GN=fumC PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 3.725e-42
Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSLQNF IGGER  MP P+V A G++K+ AA+ N+  G LDP +G+ I  AA EV EGKL+DHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K +HPNDHVN SQSSND+FPT +HIA A
Sbjct:   28 RSLQNFRIGGER--MPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATA 153          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_CAUCR (Fumarate hydratase class II OS=Caulobacter crescentus GN=fumC PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.865e-42
Identity = 89/128 (69.53%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL NF IG E++  P P+VRA GI+K+ AA+ N+  G LDP I + I+ AA EV EGKLNDHFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K VHPNDHVN SQSSNDTFPT MHIA A
Sbjct:   28 RSLGNFKIGWEKQ--PLPVVRALGIVKRAAAEANLALGKLDPKIAETIIAAANEVIEGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGEMGSKKPVHPNDHVNMSQSSNDTFPTAMHIACA 153          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_THEAQ (Fumarate hydratase class II OS=Thermus aquaticus GN=fumC PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.298e-42
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL++F IG  R RMP  I+RA+G+LKK AA+ N+E G L   I +AI+QAA+EV  GKL+DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG   G K VHPNDHVNR QSSNDTFPT M++A
Sbjct:   27 RSLEHFRIGAWRFRMPLEIIRAYGMLKKAAARANLELGELPEEIARAIIQAAEEVIAGKLDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYVHPNDHVNRGQSSNDTFPTAMYVA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_RHIME (Fumarate hydratase class II OS=Rhizobium meliloti GN=fumC PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 8.298e-42
Identity = 89/128 (69.53%), Postives = 104/128 (81.25%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL NF IG E++  P  IVRA GI+K+ AA+ NM  G LDPAIG AI++AAQEV +GKL++HFPLVVWQTGSGTQSNMNANEV++NRA E+LG   G +K VHPNDHVN SQSSNDT+PT MHIA A
Sbjct:   28 RSLGNFKIGWEKQ--PLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACA 153          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMH_YEAST2.254e-4776.38Fumarate hydratase, mitochondrial OS=Saccharomyces... [more]
FUMH_DICDI4.252e-4671.88Fumarate hydratase, mitochondrial OS=Dictyostelium... [more]
FUMH_CAEEL1.047e-4471.20Probable fumarate hydratase, mitochondrial OS=Caen... [more]
FUMC_THET22.579e-4368.50Fumarate hydratase class II OS=Thermus thermophilu... [more]
FUMC_RHILO3.369e-4371.09Fumarate hydratase class II OS=Rhizobium loti GN=f... [more]
FUMC_BRUSU3.725e-4267.97Fumarate hydratase class II OS=Brucella suis GN=fu... [more]
FUMC_BRUME3.725e-4267.97Fumarate hydratase class II OS=Brucella melitensis... [more]
FUMC_CAUCR4.865e-4269.53Fumarate hydratase class II OS=Caulobacter crescen... [more]
FUMC_THEAQ8.298e-4268.00Fumarate hydratase class II OS=Thermus aquaticus G... [more]
FUMC_RHIME8.298e-4269.53Fumarate hydratase class II OS=Rhizobium meliloti ... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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