FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_HELPJ (Aspartate ammonia-lyase OS=Helicobacter pylori J99 GN=aspA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.246e-21
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+ +NF I  ++       +++F  +KK AA  N + GL D  +  AI  A   + +GK +D F + + Q G+GT +NMN NEVIAN A E +GH++GE +  HPNDHVNRSQS+ND +P+ + IA
Sbjct:   25 RASENFFITNDKLCSYPVFIKSFAQVKKAAALANAQLGLIDEKLKIAICHACDLLVDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQKGEYQFCHPNDHVNRSQSTNDAYPSALKIA 150          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_SULSO (Fumarate hydratase class II OS=Sulfolobus solfataricus GN=fumC PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.627e-21
Identity = 57/113 (50.44%), Postives = 73/113 (64.60%), Query Frame = 1
Query:   40 RMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            + P  I+ + G+LKK  AKVN + GL D  I  +I++A+ ++ +GKL+D   L V+QTGSGT  NMN NEVIA  A+     K     VHPNDHVN  QSSNDT PT + IAA
Sbjct:   17 KFPRRIIWSMGVLKKSCAKVNADLGLLDKKIADSIIKASDDLIDGKLDDKIVLDVFQTGSGTGLNMNVNEVIAEVASSYSNLK-----VHPNDHVNFGQSSNDTVPTAIRIAA 124          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_HAEIN (Aspartate ammonia-lyase OS=Haemophilus influenzae GN=aspA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.125e-21
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEV-AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF+I           VR   ++KK  A  N E G  P+ I KAI+ A  E+   GK  D FP  V+Q G+GT  NMN NEV+AN A E +GHK+GE  +++P DHVN SQS+ND +PT   IA
Sbjct:   31 RAVENFNISNVTISDVPEFVRGMVMVKKATALANGELGAIPSDIAKAIVAACDEILTTGKCLDQFPSDVYQGGAGTSVNMNTNEVVANLALEKIGHKKGEYNVINPMDHVNASQSTNDAYPTGFRIA 157          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_HELPY (Aspartate ammonia-lyase OS=Helicobacter pylori GN=aspA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 54/126 (42.86%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+ +NF I  ++       +++F  +KK A   N++ GL D  +  AI  A   + +GK +D F + + Q G+GT +NMN NEVIAN A E +GH++GE +  HPNDHVNRSQS+ND +P+ + IA
Sbjct:   25 RASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQLGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQKGEYQFCHPNDHVNRSQSTNDAYPSALKIA 150          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_SHIFL (Aspartate ammonia-lyase OS=Shigella flexneri GN=aspA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIA 155          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_ECOLI (Aspartate ammonia-lyase OS=Escherichia coli (strain K12) GN=aspA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIA 155          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_ECOL6 (Aspartate ammonia-lyase OS=Escherichia coli O6 GN=aspA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIA 155          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_ECO57 (Aspartate ammonia-lyase OS=Escherichia coli O157:H7 GN=aspA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIA 155          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_SERMA (Aspartate ammonia-lyase OS=Serratia marcescens GN=aspA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.055e-20
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIA 372
            R+++NF I   +       VR   ++KK AA  N E    P  I   I+QA  EV + GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDH+N+ QS+ND +PT   IA
Sbjct:   29 RAIENFYISNSKISDVPEFVRGMVMVKKAAAMANKELKTIPRKIADVIIQACDEVLDKGKCMDQFPVDVFQGGAGTSLNMNTNEVLANIGLELMGHQKGEYQYLNPNDHLNKCQSTNDAYPTGFRIA 155          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_PSEAE (Aspartate ammonia-lyase OS=Pseudomonas aeruginosa GN=aspA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.175e-17
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHI 369
            R++ NF + G        +V A  ++K+ AA  N + G L      AI +A   +  G  ++ F + + Q G+GT +NMNANEVIAN A E +GH +GE K +HPN+ VN +QS+ND +PT + +
Sbjct:   31 RAVNNFRLSGVPLSHYPKLVVALAMVKQAAADANRQLGHLPEDKHAAISEACARLIRGDFHEQFVVDMIQGGAGTSTNMNANEVIANIALEAMGHTKGEYKYLHPNNDVNMAQSTNDAYPTAIRL 155          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ASPA_HELPJ1.246e-2143.65Aspartate ammonia-lyase OS=Helicobacter pylori J99... [more]
FUMC_SULSO1.627e-2150.44Fumarate hydratase class II OS=Sulfolobus solfatar... [more]
ASPA_HAEIN2.125e-2145.67Aspartate ammonia-lyase OS=Haemophilus influenzae ... [more]
ASPA_HELPY2.775e-2142.86Aspartate ammonia-lyase OS=Helicobacter pylori GN=... [more]
ASPA_SHIFL8.074e-2143.31Aspartate ammonia-lyase OS=Shigella flexneri GN=as... [more]
ASPA_ECOLI8.074e-2143.31Aspartate ammonia-lyase OS=Escherichia coli (strai... [more]
ASPA_ECOL68.074e-2143.31Aspartate ammonia-lyase OS=Escherichia coli O6 GN=... [more]
ASPA_ECO578.074e-2143.31Aspartate ammonia-lyase OS=Escherichia coli O157:H... [more]
ASPA_SERMA1.055e-2043.31Aspartate ammonia-lyase OS=Serratia marcescens GN=... [more]
ASPA_PSEAE3.175e-1739.20Aspartate ammonia-lyase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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