FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_CORGL (Aspartate ammonia-lyase OS=Corynebacterium glutamicum GN=aspA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.175e-17
Identity = 52/122 (42.62%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVA-EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPT 357
            R++ NF I           +R    +KK AA  N      PA   +AI+ A  ++  E +  D FP+ V+Q G+GT  NMN NEV+AN A E LGH++GE  I+HP D VN SQS+ND++PT
Sbjct:   80 RAVDNFQISRTTINHVPDFIRGMVQVKKAAALANRRLHTLPAQKAEAIVWACDQILIEERCMDQFPIDVFQGGAGTSLNMNTNEVVANLALEFLGHEKGEYHILHPMDDVNMSQSTNDSYPT 201          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_PSEFL (Aspartate ammonia-lyase OS=Pseudomonas fluorescens GN=aspA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.147e-17
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHI 369
            R++ NF + G        +V    ++K+ AA  N E G L      AI +A   +  G  ++ F + + Q G+GT +NMNANEVIAN A E +GH++GE + +HPN+ VN +QS+ND +PT + +
Sbjct:   35 RAVNNFRLSGVPISHYPKLVVGLAMVKQAAADANRELGQLSERKHAAISEACARLIRGDFHEEFVVDMIQGGAGTSTNMNANEVIANIALEAMGHQKGEYQYLHPNNDVNMAQSTNDAYPTAIRL 159          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ASPA_CORGL3.175e-1742.62Aspartate ammonia-lyase OS=Corynebacterium glutami... [more]
ASPA_PSEFL4.147e-1738.40Aspartate ammonia-lyase OS=Pseudomonas fluorescens... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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