FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_AGRT5 (Fumarate hydratase class II OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=fumC PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 9.174e-41
Identity = 86/126 (68.25%), Postives = 101/126 (80.16%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY-GLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL NF IG E++  P  +VRA GI+K+ AA+ NM   GLDP +G AI+ AAQEV +GKL +HFPLVVWQTGSGTQSNMNANEVI+NRA E+LG + G +K VHPNDHVN SQSSNDT+PT MHIA
Sbjct:   28 RSLGNFKIGWEKQ--PASVVRALGIVKQAAARANMALAGLDPKVGDAIIAAAQEVIDGKLTEHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGEMGTKKPVHPNDHVNMSQSSNDTYPTAMHIA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BORPA (Fumarate hydratase class II OS=Bordetella parapertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.465e-38
Identity = 85/128 (66.41%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RGE + VHPNDHVNR QSSNDTFPT MH+AAA
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVVAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BORBR (Fumarate hydratase class II OS=Bordetella bronchiseptica GN=fumC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.465e-38
Identity = 85/128 (66.41%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RGE + VHPNDHVNR QSSNDTFPT MH+AAA
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVVAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_METEA (Fumarate hydratase class II OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=fumC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.913e-38
Identity = 86/128 (67.19%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RS+QNF IG ER+  P P+V A GI+K+ AA VN + G LDP I  AI ++A EV  GK +D FPLVVWQTGSGTQSNMNANEVIA+ A E LG KRG K  VHPNDH NR QSSNDTFPT MHIA A
Sbjct:   35 RSIQNFKIGTERQ--PAPLVHALGIVKQAAALVNKDLGGLDPKIADAIAESAAEVVAGKHDDEFPLVVWQTGSGTQSNMNANEVIASLANERLGGKRGGKSPVHPNDHCNRGQSSNDTFPTAMHIAVA 160          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BORPE (Fumarate hydratase class II OS=Bordetella pertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.913e-38
Identity = 85/128 (66.41%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RGE + VHPNDHVNR QSSNDTFPT MH+AAA
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC2_PSEAE (Fumarate hydratase class II 2 OS=Pseudomonas aeruginosa GN=fumC2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.115e-37
Identity = 80/128 (62.50%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL+NF IGG+R  MP  ++ A  ++KK AA+VN   G L P + + I QAA EV  G+ ++HFPLVVWQTGSGTQ+NMN NEVIA RA E+ G+ RG K  VHPNDHVNR+QSSND+FPT MHIAAA
Sbjct:   26 RSLENFAIGGQR--MPLAVIHALALIKKAAARVNDHLGELPPEVARLIEQAADEVLAGRHDEHFPLVVWQTGSGTQTNMNVNEVIAGRANELAGNPRGGKSPVHPNDHVNRAQSSNDSFPTAMHIAAA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC1_BRAJA (Fumarate hydratase class II 1 OS=Bradyrhizobium japonicum GN=fumC1 PE=3 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 2.762e-37
Identity = 84/128 (65.62%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RS QNF IG   +RMP  +V A GI+K  AA+ N E GL D     AI++AA+EV +G L+DHFPLVVWQTGSGTQ+NMN NEVIANRA E+LG + G +K VHPNDHVN SQSSND+FPT MHIAAA
Sbjct:   38 RSRQNFRIG--TDRMPISLVHALGIVKLAAAQSNRELGLLDQRRASAIIRAAREVIDGSLDDHFPLVVWQTGSGTQTNMNLNEVIANRANELLGGELGAKKPVHPNDHVNMSQSSNDSFPTAMHIAAA 163          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_COXBU (Fumarate hydratase class II OS=Coxiella burnetii GN=fumC PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 8.037e-37
Identity = 80/128 (62.50%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL NF IG  RE MP  ++RAFG+LKK A   N+E G +       I++A +E+  GKLNDHFPL +WQTGSGTQ+NMN NEVI+NRA E+ G K G K  VHPNDHVN SQSSNDTFPT MHI AA
Sbjct:   25 RSLINFAIG--RETMPPELIRAFGVLKKAAVLTNVELGKVSQEKANFILKACEELIAGKLNDHFPLKIWQTGSGTQTNMNVNEVISNRAIELAGGKLGSKEPVHPNDHVNMSQSSNDTFPTAMHITAA 150          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_RICBR (Fumarate hydratase class II OS=Rickettsia bellii (strain RML369-C) GN=fumC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.790e-36
Identity = 76/126 (60.32%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA-AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL+NF IG  ++RMPE ++R+  ILKKCAAKVN+E+G L+P I ++I +A   +   + +D+FPLVVWQTGSGTQ+NMN NEVIA+ A  E+ G K G+  VHPNDHVN+ QSSND+FPT MHIA
Sbjct:   28 RSLENFKIG--KQRMPEILIRSLAILKKCAAKVNLEFGDLEPKIAESIDKATSRILNAEFSDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGMKGGKSPVHPNDHVNKGQSSNDSFPTAMHIA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_DEIRA (Fumarate hydratase class II OS=Deinococcus radiodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.790e-36
Identity = 80/126 (63.49%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS+ NF IG +      P++RA GILKK AA+ N E G  PA +   I++AA EV  GKL++HFPLVV+QTGSGTQSNMNANEVI+NRA E+ G + G +K VHPNDHVNR QSSNDTFPT MHIA
Sbjct:   28 RSIHNFPIGRDTFVWGRPVIRALGILKKGAAQANAELGELPADVADLIVKAADEVIAGKLDEHFPLVVFQTGSGTQSNMNANEVISNRAIELAGGEMGSKKPVHPNDHVNRGQSSNDTFPTAMHIA 153          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_AGRT59.174e-4168.25Fumarate hydratase class II OS=Agrobacterium tumef... [more]
FUMC_BORPA1.465e-3866.41Fumarate hydratase class II OS=Bordetella parapert... [more]
FUMC_BORBR1.465e-3866.41Fumarate hydratase class II OS=Bordetella bronchis... [more]
FUMC_METEA1.913e-3867.19Fumarate hydratase class II OS=Methylobacterium ex... [more]
FUMC_BORPE1.913e-3866.41Fumarate hydratase class II OS=Bordetella pertussi... [more]
FUMC2_PSEAE2.115e-3762.50Fumarate hydratase class II 2 OS=Pseudomonas aerug... [more]
FUMC1_BRAJA2.762e-3765.63Fumarate hydratase class II 1 OS=Bradyrhizobium ja... [more]
FUMC_COXBU8.037e-3762.50Fumarate hydratase class II OS=Coxiella burnetii G... [more]
FUMC_RICBR1.790e-3660.32Fumarate hydratase class II OS=Rickettsia bellii (... [more]
FUMC_DEIRA1.790e-3663.49Fumarate hydratase class II OS=Deinococcus radiodu... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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