FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..379. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIN (Fumarate hydratase class II OS=Leptospira interrogans GN=fumC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.989e-36
Identity = 81/128 (63.28%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL +F IG +R   P  ++RA GILKK AA VN E GL      K I+QAA EV  GKL++HFPL VWQTGSGTQ+NMN+NEVI+NRA EI G  +G +K +HPND VN++QSSNDTFPT MHIAAA
Sbjct:   27 RSLHHFHIGNDR--FPREMIRALGILKKSAAVVNAELGLLSEDKKKLIVQAADEVISGKLDEHFPLSVWQTGSGTQTNMNSNEVISNRAIEIAGGVKGSKKPIHPNDDVNKAQSSNDTFPTAMHIAAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIC (Fumarate hydratase class II OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fumC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.989e-36
Identity = 81/128 (63.28%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL +F IG +R   P  ++RA GILKK AA VN E GL      K I+QAA EV  GKL++HFPL VWQTGSGTQ+NMN+NEVI+NRA EI G  +G +K +HPND VN++QSSNDTFPT MHIAAA
Sbjct:   27 RSLHHFHIGNDR--FPREMIRALGILKKSAAVVNAELGLLSEDKKKLIVQAADEVISGKLDEHFPLSVWQTGSGTQTNMNSNEVISNRAIEIAGGVKGSKKPIHPNDDVNKAQSSNDTFPTAMHIAAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_RALSO (Fumarate hydratase class II OS=Ralstonia solanacearum GN=fumC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.804e-36
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSLQNFDI G+R  MP  ++ A   +K+ +A VN   GL PA    A++ AA EV  GK    FPLVVWQTGSGTQSNMN NEV+ANRA+E+LG +RGE ++VHPND VNRSQSSND FPT MH+AA
Sbjct:   27 RSLQNFDIAGDR--MPRELIDALARIKRASAAVNQRLGLLPADKANAVIAAADEVIAGKHPGEFPLVVWQTGSGTQSNMNMNEVLANRASELLGGERGEARLVHPNDDVNRSQSSNDVFPTAMHVAA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_PSEPK (Fumarate hydratase class II OS=Pseudomonas putida (strain KT2440) GN=fumC-2 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.886e-36
Identity = 83/128 (64.84%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL NF IG  +ERMP  ++ A  ++KK AA+VN   G  PA I + I QAA EV +G+ +D FPLVVWQTGSGTQSNMN NEVIA RA E+ G  RG K  VHPNDHVNRSQSSND FPT MHIAAA
Sbjct:   26 RSLINFAIG--KERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGKGRGGKAPVHPNDHVNRSQSSNDCFPTAMHIAAA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_RICFE (Fumarate hydratase class II OS=Rickettsia felis GN=fumC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.516e-35
Identity = 77/126 (61.11%), Postives = 96/126 (76.19%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL+NF IG  +++MPE ++RA  ILKKCAA+VN E+G L+  I  +I +A   + EG+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L  K+G K  VHPNDHVN+ QSSND+FPT MHIA
Sbjct:   28 RSLENFKIG--KQKMPEILIRALAILKKCAAQVNYEFGDLEAKIATSIDKATDRILEGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTSKKGGKSPVHPNDHVNKGQSSNDSFPTAMHIA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_RICCN (Fumarate hydratase class II OS=Rickettsia conorii GN=fumC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.980e-35
Identity = 76/126 (60.32%), Postives = 96/126 (76.19%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA-AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL+NF IG  +++MPE ++RA  ILKKCAA+VN E+G L+  I  +I +A   + EG+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A  E+ G K G+  VHPNDHVN+ QSSND+FPT MHIA
Sbjct:   28 RSLENFKIG--KQKMPEILIRALAILKKCAAQVNHEFGDLEAKIAISIDKATDRILEGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKSPVHPNDHVNKGQSSNDSFPTAMHIA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_NITEU (Fumarate hydratase class II OS=Nitrosomonas europaea GN=fumC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.980e-35
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL NF+I GER  MP  ++ A  ++K+ AA VN + GL D  I +AI+ AA EV  G+    FPLVVWQTGSGTQ+NMN NEV+ANRA+EILG  RG+ + VHPNDHVN+ QSSND FPT MHIAA
Sbjct:   28 RSLNNFNISGER--MPSALIHALALVKRAAASVNHDLGLLDENIARAIITAADEVLAGEHAGEFPLVVWQTGSGTQTNMNMNEVLANRASEILGGTRGKGRKVHPNDHVNKGQSSNDVFPTAMHIAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_CAMJE (Fumarate hydratase class II OS=Campylobacter jejuni GN=fumC PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.825e-35
Identity = 79/127 (62.20%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK-RGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS +NF IG E+  MP+ ++ AF  LKK  A VN + G LD A   AI+QA  E+  GK +D+FPL +WQTGSGTQSNMN NEVIANRA EI+G   R EK+VHPNDHVN SQSSNDTFPT M I A
Sbjct:   27 RSFENFKIGCEK--MPKVLIYAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSNMNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_PHOLL (Fumarate hydratase class II OS=Photorhabdus luminescens subsp. laumondii GN=fumC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.189e-34
Identity = 75/127 (59.06%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL++F I   +E+MP  ++ A  + K+ AA VNM+ GL P   G+AI+ AA+EV EGK    FPL +WQTGSGTQSNMN NEV+ANR +EILG  RG E+++HPND VN+SQSSND FPT MH+AA
Sbjct:   28 RSLEHFRIS--QEKMPVALIHALALTKQAAASVNMDLGLLPQERGEAIIAAAKEVLEGKHPTEFPLAIWQTGSGTQSNMNMNEVLANRGSEILGGVRGSERLIHPNDDVNKSQSSNDVFPTAMHVAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BACCR (Fumarate hydratase class II OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=fumC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.189e-34
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF IG   E+MP  IV+AF ILKK AA  N + G L     +AI++AA EV  GK N+HFPLVVWQTGSGTQSNMN NEVIANR  +IL  K  +  +HPND VN SQSSNDTFPT +H+A
Sbjct:   27 RSKENFPIG--TEQMPLEIVKAFAILKKSAALSNQKLGKLSEEKAEAIVEAADEVIAGKWNEHFPLVVWQTGSGTQSNMNVNEVIANRGNQILKEKGSDVHIHPNDDVNMSQSSNDTFPTALHVA 149          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_LEPIN3.989e-3663.28Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_LEPIC3.989e-3663.28Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_RALSO6.804e-3662.20Fumarate hydratase class II OS=Ralstonia solanacea... [more]
FUMC_PSEPK8.886e-3664.84Fumarate hydratase class II OS=Pseudomonas putida ... [more]
FUMC_RICFE1.516e-3561.11Fumarate hydratase class II OS=Rickettsia felis GN... [more]
FUMC_RICCN1.980e-3560.32Fumarate hydratase class II OS=Rickettsia conorii ... [more]
FUMC_NITEU1.980e-3561.42Fumarate hydratase class II OS=Nitrosomonas europa... [more]
FUMC_CAMJE9.825e-3562.20Fumarate hydratase class II OS=Campylobacter jejun... [more]
FUMC_PHOLL2.189e-3459.06Fumarate hydratase class II OS=Photorhabdus lumine... [more]
FUMC_BACCR2.189e-3461.60Fumarate hydratase class II OS=Bacillus cereus (st... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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