FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BACSU (Fumarate hydratase class II OS=Bacillus subtilis GN=fumC PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.733e-34
Identity = 73/126 (57.94%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS +NF IG E+  MP  +V+AF ILK+  A  N   G LD    +AI     +V +GK +D+FPLVVWQTGSGTQSNMN NEV+ANRA  +L  K  ++ +HPND VNRSQSSNDTFPT MH+AA
Sbjct:   27 RSKENFKIGSEK--MPMRVVKAFAILKRSTALANKRLGNLDAEKAEAIAAVCDDVLKGKYDDNFPLVVWQTGSGTQSNMNMNEVVANRATALLKEKNSDQTIHPNDDVNRSQSSNDTFPTAMHVAA 150          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_YERPE (Fumarate hydratase class II OS=Yersinia pestis GN=fumC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.317e-34
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL +F I   +E+MP  ++ A  + K+ AA+VNM+ GL PA   KAIM+AA EV +G     FPL +WQTGSGTQ+NMN NEV+ANRA+E+LG  RG  ++VHPND VN+SQSSND FPT MH+AA
Sbjct:   28 RSLAHFRIS--QEKMPTELIHALALTKRAAAQVNMDLGLLPAERAKAIMRAADEVLDGAHPTEFPLAIWQTGSGTQTNMNMNEVLANRASELLGGARGNNRLVHPNDDVNKSQSSNDVFPTAMHVAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_SALTY (Fumarate hydratase class II OS=Salmonella typhimurium GN=fumC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.317e-34
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL  A    AI+QAA EV  GK  D FPL +WQTGSGTQSNMN NEV+ANRA+EILG  RG E+ VHPND VN+SQSSND FPT MH+AA
Sbjct:   28 RSLEHFRIS--TEKMPVSLIHALALTKRAAAKVNQDLGLLAAEKASAIIQAADEVLAGKHADEFPLAIWQTGSGTQSNMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BACAN (Fumarate hydratase class II OS=Bacillus anthracis GN=fumC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.317e-34
Identity = 76/125 (60.80%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF IG   E+MP  IV+AF ILKK AA  N + G L     +AI+ AA E+  GK N+HFPLVVWQTGSGTQSNMN NEVIANR  +IL  K  +  +HPND VN SQSSNDTFPT +H+A
Sbjct:   27 RSKENFPIG--TEQMPLEIVKAFAILKKSAALSNQKLGKLSEEKAEAIVVAADEIIAGKWNEHFPLVVWQTGSGTQSNMNVNEVIANRGNQILKEKGSDVHIHPNDDVNMSQSSNDTFPTALHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_PASMU (Fumarate hydratase class II OS=Pasteurella multocida GN=fumC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.086e-33
Identity = 77/127 (60.63%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGK-AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS  NF IG E   MP+ I+ AFG LKK AA  N + G+ P   +  I QA  E+   KL+D FPLV+WQTGSGTQSNMN NEVI+NRA  + G K GEK I+HPND VN+SQSSNDT+PT MHIAA
Sbjct:   27 RSRNNFKIGPEAS-MPKEIIEAFGYLKKAAAYANHDLGVLPVEKRDLIAQACDEILANKLDDQFPLVIWQTGSGTQSNMNLNEVISNRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_THEEB (Fumarate hydratase class II OS=Thermosynechococcus elongatus (strain BP-1) GN=fumC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.419e-33
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL++F IG +R  MP  ++ A   LKK AA  N + G LDP   K I+QAA EV  G+ +D FPL +WQTGSGTQ+NMN NEVIANRA E+ G  +G K  +HPNDHVN SQSSNDTFPT MH+A
Sbjct:   29 RSLKHFAIGSQR--MPLAVIHAMARLKKAAAIANRDLGVLDPEKAKWIIQAADEVIAGQWDDQFPLAIWQTGSGTQTNMNVNEVIANRAIELAGGVKGSKSPIHPNDHVNCSQSSNDTFPTAMHVA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_SALTI (Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.853e-33
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL  A    AI++AA EV  GK  D FPL +WQTGSGTQSNMN NEV+ANRA+EILG  RG E+ VHPND VN+SQSSND FPT MH+AA
Sbjct:   28 RSLEHFRIS--TEKMPVSLIHALALTKRAAAKVNQDLGLLAAEKASAIIEAADEVLAGKHADEFPLAIWQTGSGTQSNMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_PSESM (Fumarate hydratase class II OS=Pseudomonas syringae pv. tomato GN=fumC-1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.853e-33
Identity = 80/128 (62.50%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL NF IG +R  MP  ++ A  ++KK AA+VN   G  PA I + I QAA EV +G+ +  FPLVVWQTGSGTQSNMN NEVIA RA E+ G  RG K  VHPNDHVNRSQSSND FPT MHIA A
Sbjct:   26 RSLINFAIGDQR--MPLAVLHALTLIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDAQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGQGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIATA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_SYNY3 (Fumarate hydratase class II OS=Synechocystis sp. (strain PCC 6803) GN=fumC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.160e-33
Identity = 77/127 (60.63%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL  FDIG +   MP  ++RAF ILKK AA  N + G  PA   + I+ AA E+  G+  DHFPL +WQTGSGTQ+NMN NEVIANRA  I G + G K  +HPNDHVN SQSSNDTFPT MHIAA
Sbjct:   29 RSLMFFDIGSDV--MPPDLIRAFAILKKAAAITNQDLGKLPADKAELIITAADEIIAGQWLDHFPLRIWQTGSGTQTNMNVNEVIANRAIAICGGELGSKNPIHPNDHVNMSQSSNDTFPTAMHIAA 153          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_RICPR (Fumarate hydratase class II OS=Rickettsia prowazekii GN=fumC PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.160e-33
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL NF I   +++MP+ ++RA  ILKKCAA+VN E+G L+  I  +I +A   +  G+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L  K+G K  VHPNDHVN+ QSSND+FPT MHIA
Sbjct:   28 RSLNNFKIS--KQKMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIA 151          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_BACSU3.733e-3457.94Fumarate hydratase class II OS=Bacillus subtilis G... [more]
FUMC_YERPE8.317e-3458.27Fumarate hydratase class II OS=Yersinia pestis GN=... [more]
FUMC_SALTY8.317e-3460.63Fumarate hydratase class II OS=Salmonella typhimur... [more]
FUMC_BACAN8.317e-3460.80Fumarate hydratase class II OS=Bacillus anthracis ... [more]
FUMC_PASMU1.086e-3360.63Fumarate hydratase class II OS=Pasteurella multoci... [more]
FUMC_THEEB1.419e-3359.52Fumarate hydratase class II OS=Thermosynechococcus... [more]
FUMC_SALTI1.853e-3359.84Fumarate hydratase class II OS=Salmonella typhi GN... [more]
FUMC_PSESM1.853e-3362.50Fumarate hydratase class II OS=Pseudomonas syringa... [more]
FUMC_SYNY33.160e-3360.63Fumarate hydratase class II OS=Synechocystis sp. (... [more]
FUMC_RICPR3.160e-3358.73Fumarate hydratase class II OS=Rickettsia prowazek... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
back to top