FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BACHD (Fumarate hydratase class II OS=Bacillus halodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.160e-33
Identity = 76/126 (60.32%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS +NF IG   E+MP  I+ AF +LKK AA VN + G L      AI  AA EV  GK +DHFPL VWQTGSGTQSNMN NEV+A R  ++L  K  +  +HPND VNRSQSSNDTFPT MHIAA
Sbjct:   27 RSYENFHIG--TEKMPMEIIYAFALLKKAAANVNKKLGQLSAEKADAITWAANEVLAGKHDDHFPLFVWQTGSGTQSNMNMNEVLARRGNQLLQEKGLDVTIHPNDDVNRSQSSNDTFPTAMHIAA 150          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_MYXXD (Fumarate hydratase class II OS=Myxococcus xanthus (strain DK 1622) GN=fumC PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.391e-33
Identity = 76/127 (59.84%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSLQNF I    ERMP  ++RA  ++KK AA+VN+E G L    G+AI++AA EV  G+ +  FPL VWQTGSGTQ+NMN NEV+ANRA+E+LG +RGE + VHPND VN+ QSSND FPT M +AA
Sbjct:   30 RSLQNFAIS--TERMPLALIRALVLVKKAAARVNVENGSLAKEKGEAIIRAADEVLAGQHDAEFPLSVWQTGSGTQTNMNTNEVLANRASELLGGERGERRKVHPNDDVNKGQSSNDVFPTAMSVAA 154          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_ECOLI (Fumarate hydratase class II OS=Escherichia coli (strain K12) GN=fumC PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.391e-33
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_ECOL6 (Fumarate hydratase class II OS=Escherichia coli O6 GN=fumC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.391e-33
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_ECO57 (Fumarate hydratase class II OS=Escherichia coli O157:H7 GN=fumC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.391e-33
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL++F I    E+MP  ++ A  + K+ AAKVN + GL       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_RICTY (Fumarate hydratase class II OS=Rickettsia typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.196e-33
Identity = 72/126 (57.14%), Postives = 92/126 (73.02%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA-AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL NF I   +++MP+ ++ A  ILKKCAA+VN E+G L+  I  +I +A   +  G+  D+FPLVVWQTGSGTQ+NMN NEVIA+ A  E+ G K G+  VHPNDHVN+ QSSND+FPT MHIA
Sbjct:   28 RSLNNFKIS--KQKMPKILIHALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKSPVHPNDHVNKGQSSNDSFPTAMHIA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_HAEIN (Fumarate hydratase class II OS=Haemophilus influenzae GN=fumC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32
Identity = 75/127 (59.06%), Postives = 88/127 (69.29%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQ-AAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS  NF IG     MP  I+ AFG LKK AA  N + G+ P   + ++  A  E+   KL+D FPLV+WQTGSGTQSNMN NEV+ANRA  + G K GEK I+HPND VN+SQSSNDTFPT MHIAA
Sbjct:   27 RSRNNFKIGPAAS-MPHEIIEAFGYLKKAAAFANHDLGVLPLEKRDLIALACDEILANKLDDQFPLVIWQTGSGTQSNMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTFPTAMHIAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_SHIFL (Fumarate hydratase class II OS=Shigella flexneri GN=fumC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.494e-32
Identity = 73/127 (57.48%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL++F I    E+MP  ++ A  + K+ AAKVN +  L       AI QAA EV  G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG  RG E+ VHPND VN+SQSSND FPT MH+AA
Sbjct:   28 RSLEHFRIS--TEKMPTSLIHALALTKRAAAKVNEDLDLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_NEIMA (Fumarate hydratase class II OS=Neisseria meningitidis serogroup A GN=fumC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.960e-32
Identity = 72/128 (56.25%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG-HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RS  NF IGGE   +P+P++ A  ++KK AA  N+  G + P     I QAA +V  GKL+  FPLVVWQTGSGTQSNMN NEV+ANRA EI G      + VHPNDHVN +QS+ND FPT +H+AAA
Sbjct:   27 RSRNNFKIGGET--LPQPLIYALALVKKAAAATNVSLGRIKPEQADLITQAADDVLNGKLDGQFPLVVWQTGSGTQSNMNMNEVLANRANEIAGTGLAAYQPVHPNDHVNHAQSTNDAFPTAIHVAAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.734e-31
Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF I G         VRA G++KK AA+ N + GL D     AI+ AA EV  G+ +D FP+ V+QTGSGT SNMNANEVIANRAAE+LG + G+++VHPNDHVN  QSSND  PT MH+A+
Sbjct:   29 RAIENFPISGIA--FGRRFVRALGVVKKAAAQANRDLGLVDDERADAIVAAADEVIAGEHDDQFPVDVFQTGSGTSSNMNANEVIANRAAELLGEEIGDRVVHPNDHVNYGQSSNDVIPTAMHVAS 152          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_BACHD3.160e-3360.32Fumarate hydratase class II OS=Bacillus halodurans... [more]
FUMC_MYXXD5.391e-3359.84Fumarate hydratase class II OS=Myxococcus xanthus ... [more]
FUMC_ECOLI5.391e-3358.27Fumarate hydratase class II OS=Escherichia coli (s... [more]
FUMC_ECOL65.391e-3358.27Fumarate hydratase class II OS=Escherichia coli O6... [more]
FUMC_ECO575.391e-3358.27Fumarate hydratase class II OS=Escherichia coli O1... [more]
FUMC_RICTY9.196e-3357.14Fumarate hydratase class II OS=Rickettsia typhi GN... [more]
FUMC_HAEIN1.569e-3259.06Fumarate hydratase class II OS=Haemophilus influen... [more]
FUMC_SHIFL3.494e-3257.48Fumarate hydratase class II OS=Shigella flexneri G... [more]
FUMC_NEIMA5.960e-3256.25Fumarate hydratase class II OS=Neisseria meningiti... [more]
FUMC_HALSA1.734e-3155.56Fumarate hydratase class II OS=Halobacterium salin... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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