FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_WIGBR (Fumarate hydratase class II OS=Wigglesworthia glossinidia brevipalpis GN=fumC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.958e-31
Identity = 70/127 (55.12%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS+ NF+I    E+MP  ++ A   +K  AAKVN +  L +     AI++A++E+  GK  D FPLV+WQTGSGTQ+NMN NEVIAN A ++LG K G+  I+HPNDHVN+SQSSND FPT MHI+A
Sbjct:   28 RSIYNFNIS--TEKMPYELIHALVQIKLVAAKVNKDLKLLEEKKADAIIKASEEILSGKYKDSFPLVIWQTGSGTQTNMNVNEVIANIAIKLLGGKYGDYSIIHPNDHVNKSQSSNDVFPTAMHISA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_CHLCV (Fumarate hydratase class II OS=Chlamydophila caviae GN=fumC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.124e-30
Identity = 68/115 (59.13%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   37 ERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAA 375
            E MP+ ++RA  ++K+CAAK N + G LD      I+ AA E+ EG   +HFPL VWQTGSGTQSNMN NEVIAN A +  G   G K  +HPNDHVN+SQSSND FPT MHIAA
Sbjct:   35 EVMPKEVIRALVLIKQCAAKANHDLGFLDSKYCDMIVSAASEILEGGFEEHFPLKVWQTGSGTQSNMNVNEVIANLAIQRHGGVVGSKTPIHPNDHVNKSQSSNDVFPTAMHIAA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_HAEDU (Fumarate hydratase class II OS=Haemophilus ducreyi GN=fumC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.468e-30
Identity = 75/127 (59.06%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS  NF IG E   MP  I+ AF  LKK AA  N E G L       I     E+   KL D FPLV+WQTGSGTQSNMN NEVIANRA  + G   GEK I+HPND VN+SQSSNDT+PT MHIAA
Sbjct:   27 RSRNNFRIGPEAS-MPVEIIEAFAYLKKAAAFANAELGALTTEKRDLIAMVCDEILANKLADEFPLVIWQTGSGTQSNMNLNEVIANRAHVLQGGALGEKSIIHPNDDVNKSQSSNDTYPTAMHIAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_OCEIH (Fumarate hydratase class II OS=Oceanobacillus iheyensis GN=fumC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.504e-30
Identity = 71/126 (56.35%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS QNF IG E+  MP  I++AF ILK+  A+ N E GL +    +AI  AA +V    L DHFPLVVWQTGSGTQSNMN NEV+A    + L  +  +  +HPND VN+SQSSNDT+PT MHIAA
Sbjct:   27 RSKQNFPIGNEK--MPVEIIKAFAILKRSTAEANFELGLMERDKMEAIQYAADQVLNDSLTDHFPLVVWQTGSGTQSNMNVNEVLAFVGNKWLQEQGSDLKLHPNDDVNKSQSSNDTYPTAMHIAA 150          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_METAC (Fumarate hydratase class II OS=Methanosarcina acetivorans GN=fumC PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.272e-30
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL +F IG +   MP+ +  A+G +KK AA VN   G+ P    + I + A EV  GKL+  FPL VWQTGSGTQSNMN NEVI+NRA +++G   G K  VHPND VN SQSSNDTFPT MHIA
Sbjct:   40 RSLIHFSIGDDY--MPKEVYHAYGYVKKAAALVNEAAGIIPPWKAELIARVADEVIAGKLDSEFPLYVWQTGSGTQSNMNVNEVISNRAIQLVGGSLGSKHPVHPNDDVNMSQSSNDTFPTAMHIA 163          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_HELPY (Fumarate hydratase class II OS=Helicobacter pylori GN=fumC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.272e-30
Identity = 70/127 (55.12%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL-GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL+NF IG   E+MP+ ++ AF  LK+  A VN + G L     +AI++A   + +G+L   FPL +WQTGSGTQ+NMN NEVIAN+A EIL G+ R +K++HPND VN SQSSNDTFPT MHI +
Sbjct:   27 RSLENFKIG--TEKMPKELIGAFAKLKRSLAVVNHKLGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFREKKLIHPNDDVNMSQSSNDTFPTAMHIVS 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_LISIN (Fumarate hydratase class II OS=Listeria innocua GN=fumC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.579e-30
Identity = 75/126 (59.52%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVN-MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS +NF IG     MP+ I+ AF  LKK AAKVN +E  L  A   AI     ++ +G+L++HFPLVVWQTGSGTQSNMN NEVIA+ A   L    GE+ VHPND VN SQSSNDTFPT MHIAA
Sbjct:   26 RSRRNFAIGDNY--MPKEIIYAFAQLKKAAAKVNALEGKLSEAKSVAIGNVCDQIIQGELDEHFPLVVWQTGSGTQSNMNVNEVIAHVANLTL----GEEKVHPNDDVNMSQSSNDTFPTAMHIAA 145          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_HELPJ (Fumarate hydratase class II OS=Helicobacter pylori J99 GN=fumC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.579e-30
Identity = 69/127 (54.33%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL-GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL+NF IG   E+MP+ ++ AF  LK+  A VN + G L     +AI++A   + +G+L   FPL +WQTGSGTQ+NMN NEVIAN+A EIL G+ R +K++HPND VN SQSSNDTFPT MH+ +
Sbjct:   27 RSLENFKIG--TEKMPKELIGAFAKLKRSLAVVNHKLGKLSLEKSQAIIKACDCILKGELCGEFPLAIWQTGSGTQTNMNLNEVIANKATEILGGNFREKKLIHPNDDVNMSQSSNDTFPTAMHVVS 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_CHLTR (Fumarate hydratase class II OS=Chlamydia trachomatis GN=fumC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.579e-30
Identity = 72/127 (56.69%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS + F  G  +E MP  I+ A   +KKCAAK N + G LD      I+ A  E+  G+ ++HFPL VWQTGSGTQSNMN NEVIAN A +  G + G K  VHPNDHVN+SQSSND FPT MHIAA
Sbjct:   25 RSQEFFSYG--KESMPLEIIHALVKIKKCAAKANGDLGCLDAKRRDMIVAATDEILSGEFDEHFPLKVWQTGSGTQSNMNVNEVIANLAIQRHGGELGSKHPVHPNDHVNKSQSSNDVFPTAMHIAA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC2_BRAJA (Fumarate hydratase class II 2 OS=Bradyrhizobium japonicum GN=fumC2 PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.579e-30
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL++F IG  R+ MP  +++++ ILKK AA  N   G LD  I K I+    E+  G+ +D FPL VW TGSGTQ NMN NEVI+NR  ++ G   G K+ VHPNDHVN SQSSND+FP+ M+IAAA
Sbjct:   28 RSLEHFSIG--RDLMPREMIQSYAILKKAAANANYAGGRLDGKIHKLIVHTCDEILAGQHHDMFPLHVWMTGSGTQFNMNVNEVISNRCCQLAGTALGSKLPVHPNDHVNMSQSSNDSFPSAMYIAAA 153          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_WIGBR2.958e-3155.12Fumarate hydratase class II OS=Wigglesworthia glos... [more]
FUMC_CHLCV1.124e-3059.13Fumarate hydratase class II OS=Chlamydophila cavia... [more]
FUMC_HAEDU1.468e-3059.06Fumarate hydratase class II OS=Haemophilus ducreyi... [more]
FUMC_OCEIH2.504e-3056.35Fumarate hydratase class II OS=Oceanobacillus ihey... [more]
FUMC_METAC4.272e-3057.14Fumarate hydratase class II OS=Methanosarcina acet... [more]
FUMC_HELPY4.272e-3055.12Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_LISIN5.579e-3059.52Fumarate hydratase class II OS=Listeria innocua GN... [more]
FUMC_HELPJ5.579e-3054.33Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_CHLTR5.579e-3056.69Fumarate hydratase class II OS=Chlamydia trachomat... [more]
FUMC2_BRAJA5.579e-3053.91Fumarate hydratase class II 2 OS=Bradyrhizobium ja... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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