FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..379. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_CHRVO (Fumarate hydratase class II OS=Chromobacterium violaceum GN=fumC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.516e-30
Identity = 71/128 (55.47%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL +F I  E+  MP  ++ A   +K+  A+ N   G LD A   AI  AA EV  G+ +  FPL VWQTGSGTQSNMN NEV+ANRA+E+LG +RG  ++VHPND VN  QSSND FPT MH+AAA
Sbjct:   29 RSLAHFRISSEK--MPPELILALARVKRACAEANRGLGKLDDAKAAAIAGAADEVLAGRHDGEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGRRGPGRLVHPNDDVNLGQSSNDIFPTAMHVAAA 154          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAAR (Fumarate hydratase class II OS=Staphylococcus aureus (strain MRSA252) GN=fumC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.623e-29
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L     ++ +HPND VN+SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHHSDESIHPNDDVNKSQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAAC (Fumarate hydratase class II OS=Staphylococcus aureus (strain COL) GN=fumC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.623e-29
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAAIANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_CHLPN (Fumarate hydratase class II OS=Chlamydia pneumoniae GN=fumC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.120e-29
Identity = 68/115 (59.13%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   37 ERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAA 375
            E MP  ++RA   +KKCAA+ N + G LD      I+ AA E+ EG   +HFPL VWQTGSGTQSNMN NEVIAN A    G   G K  +HPNDHVN+SQSSND FPT MHIAA
Sbjct:   35 ELMPYEVIRALVWIKKCAAQANQDLGFLDSKHCDMIVAAADEILEGGFEEHFPLKVWQTGSGTQSNMNVNEVIANLAIRHHGGVLGSKDPIHPNDHVNKSQSSNDVFPTAMHIAA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAAW (Fumarate hydratase class II OS=Staphylococcus aureus (strain MW2) GN=fumC PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.616e-29
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAAS (Fumarate hydratase class II OS=Staphylococcus aureus (strain MSSA476) GN=fumC PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.616e-29
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN+SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STRAW (Fumarate hydratase class II OS=Streptomyces avermitilis GN=fumC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.168e-29
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF I G+R  +    + A   +K  AAKVN E G LD  + +AI +AA EVAEG+ ++HFP+ V+QTGSGT SNMNANEVIA  A E LG     + VHPNDHVN SQSSND FP+ +HIAA
Sbjct:   34 RAVENFPISGQR--LERAHIEALARIKGAAAKVNAELGVLDKDVAEAIQEAAAEVAEGRWDEHFPVDVFQTGSGTSSNMNANEVIATLATERLG-----RDVHPNDHVNASQSSNDVFPSSIHIAA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAAN (Fumarate hydratase class II OS=Staphylococcus aureus (strain N315) GN=fumC PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.168e-29
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNESQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAAM (Fumarate hydratase class II OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fumC PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.168e-29
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +ERMP  +V  F  LK+ AA  N + G L  A   AI+ A  ++  G+L++HFPLVVWQTGSGTQSNMN NEV++  A   L   + ++ +HPND VN SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNESQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAHJ (Fumarate hydratase class II OS=Staphylococcus haemolyticus (strain JCSC1435) GN=fumC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.052e-28
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +ERMP  +V  F  LK+ AA  N E G L  A   AI+ A   + +G+L++HFPLVVWQTGSGTQSNMN NEV++  A + L  +  ++ +HPND VN+SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRGAALANHELGKLSDAKKDAIVYACDLILKGELDEHFPLVVWQTGSGTQSNMNVNEVVSFVANKYLKEQGIDESIHPNDDVNKSQSSNDTFPTAMHVA 149          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_CHRVO9.516e-3055.47Fumarate hydratase class II OS=Chromobacterium vio... [more]
FUMC_STAAR1.623e-2952.80Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAC1.623e-2952.80Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_CHLPN2.120e-2959.13Fumarate hydratase class II OS=Chlamydia pneumonia... [more]
FUMC_STAAW3.616e-2952.80Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAS3.616e-2952.80Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STRAW6.168e-2955.56Fumarate hydratase class II OS=Streptomyces avermi... [more]
FUMC_STAAN6.168e-2952.80Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAM6.168e-2952.80Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAHJ1.052e-2853.60Fumarate hydratase class II OS=Staphylococcus haem... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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