FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..379. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_CHLMU (Fumarate hydratase class II OS=Chlamydia muridarum GN=fumC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.052e-28
Identity = 71/127 (55.91%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS   F  G  +E MP  +++A   +KKCAAK N +   LD      I+ A+ E+  G L +HFPL VWQTGSGTQSNMN NEVIAN A +  G + G K  VHPNDHVN+SQSSND FPT MHIAA
Sbjct:   25 RSKNFFSYG--KELMPIEVIQALVKIKKCAAKANGDLQCLDAKRRDMIVAASDEILSGGLEEHFPLKVWQTGSGTQSNMNVNEVIANLAIKRHGGELGSKNPVHPNDHVNKSQSSNDVFPTAMHIAA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_SYNPX (Fumarate hydratase class II OS=Synechococcus sp. (strain WH8102) GN=fumC PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.795e-28
Identity = 65/129 (50.39%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL--DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            RSL NF IG   +++P  ++ A   +K+C A VN  +GL  D  +   I +A Q +  G+ +DHFPL VWQTGSGTQ+NMN NEVI+N AA+  G   G  + +HPNDH+NRSQS+ND FP  +H+AAA
Sbjct:   29 RSLNNFAIG--HQKIPAELIHALARIKQCCAAVNGRHGLLNDQQVA-LIERAGQAIQTGQQDDHFPLSVWQTGSGTQTNMNVNEVISNLAAQESGENLGSHRPLHPNDHINRSQSTNDVFPAAIHVAAA 154          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_LISMF (Fumarate hydratase class II OS=Listeria monocytogenes serotype 4b (strain F2365) GN=fumC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.795e-28
Identity = 73/126 (57.94%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS +NF IG     MP  I+ AF  LKK  AKVN   G L      AI Q   ++ +G+L++HFPLVVWQTGSGTQSNMN NEVIA+ A   L    GE  +HPND VN SQSSNDTFPT MHIAA
Sbjct:   26 RSKRNFAIGDNP--MPIEIIYAFAQLKKATAKVNAAEGKLSEEKAIAIGQVCDQIIQGELDEHFPLVVWQTGSGTQSNMNVNEVIAHVANLTL----GEGQIHPNDDVNMSQSSNDTFPTAMHIAA 145          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STRCO (Fumarate hydratase class II OS=Streptomyces coelicolor GN=fumC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.061e-28
Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF + G+R  +    + A   +K  AAKVN E G LD  +  AI +AA EVAEGK ++HFP+ V+QTGSGT SNMN NEV+A  A E LG     + VHPNDHVN SQSSND FP+ +HIAA
Sbjct:   28 RAVENFPVSGQR--IERAHIEALARIKSAAAKVNAELGVLDEDVAGAIQEAAGEVAEGKWDEHFPVDVFQTGSGTSSNMNTNEVVATLATERLG-----RDVHPNDHVNASQSSNDVFPSSIHIAA 146          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAES (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fumC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.061e-28
Identity = 64/125 (51.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +E MP  ++  F  LK+ AA  N E G L      AI+ A   +  G+L++HFPLV+WQTGSGTQSNMN NEV++  A E L     ++ +HPND VN+SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KEHMPIQVIYGFAQLKRGAALANHELGKLSDEKKNAIVYACDRILNGELDNHFPLVIWQTGSGTQSNMNVNEVVSYVANEYLKKHGSKETIHPNDDVNKSQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAEQ (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fumC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.061e-28
Identity = 64/125 (51.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +E MP  ++  F  LK+ AA  N E G L      AI+ A   +  G+L++HFPLV+WQTGSGTQSNMN NEV++  A E L     ++ +HPND VN+SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KEHMPIQVIYGFAQLKRGAALANHELGKLSDEKKNAIVYACDRILNGELDNHFPLVIWQTGSGTQSNMNVNEVVSYVANEYLKKHGSKETIHPNDDVNKSQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_LISMO (Fumarate hydratase class II OS=Listeria monocytogenes GN=fumC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.061e-28
Identity = 73/126 (57.94%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RS +NF IG     MP  I+ AF  LKK  AKVN   G L      AI Q   ++ +G+L++HFPLVVWQTGSGTQSNMN NEVIA+ A   L    GE  +HPND VN SQSSNDTFPT MHIAA
Sbjct:   26 RSKRNFAIGDNP--MPIEIIYAFAQLKKATAKVNAAEGKLAEEKAIAIGQVCDQIIQGELDEHFPLVVWQTGSGTQSNMNVNEVIAHVANLTL----GEGQIHPNDDVNMSQSSNDTFPTAMHIAA 145          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_BLOFL (Fumarate hydratase class II OS=Blochmannia floridanus GN=fumC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.222e-28
Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    4 SLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            SL+ F+I    E+MP  +++A   +K+ +A+VN +  L D    +AI+ A  E+  G   + FPL VWQTGSGTQSNMN NEV+ANRA E+L   +   +VHPNDHVN+SQSSND FP+ MHIAA
Sbjct:   14 SLKFFNIS--TEKMPWELIKALAQIKRVSAQVNYDLKLLDYERSQAIIAAVDEILSGNHKNEFPLSVWQTGSGTQSNMNMNEVLANRANELLRKNQINIVVHPNDHVNKSQSSNDVFPSAMHIAA 136          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_STAS1 (Fumarate hydratase class II OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=fumC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.591e-27
Identity = 66/125 (52.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS +NF +G  +ERMP  +V  F  LK+ AA  N   G L  A   AI+ A   V   +L++HFPLVVWQTGSGTQSNMN NEV++  A   L  +  ++ +HPND VN+SQSSNDTFPT MH+A
Sbjct:   27 RSKRNFPVG--KERMPIEVVYGFAQLKRGAALANHALGKLSDAKKDAIVYACDRVLNKELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANTYLKEQGIDESIHPNDDVNKSQSSNDTFPTAMHVA 149          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_PROMM (Fumarate hydratase class II OS=Prochlorococcus marinus (strain MIT 9313) GN=fumC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.385e-27
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            RSL NF I    +RMP  ++ A  ++K+ AA VN   G LD      I++AA  VA G  +D FPL VWQTGSGT +NMN NEVI+N A++      G  + VHPNDHVNRSQS+ND FPT +HIAA
Sbjct:   30 RSLLNFAIS--TDRMPVELIHALALIKQAAASVNCRLGVLDEVQRDQIIKAASAVASGLHDDQFPLRVWQTGSGTHTNMNVNEVISNLASQANDEPLGSHRPVHPNDHVNRSQSTNDAFPTAIHIAA 154          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_CHLMU1.052e-2855.91Fumarate hydratase class II OS=Chlamydia muridarum... [more]
FUMC_SYNPX1.795e-2850.39Fumarate hydratase class II OS=Synechococcus sp. (... [more]
FUMC_LISMF1.795e-2857.94Fumarate hydratase class II OS=Listeria monocytoge... [more]
FUMC_STRCO3.061e-2853.97Fumarate hydratase class II OS=Streptomyces coelic... [more]
FUMC_STAES3.061e-2851.20Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_STAEQ3.061e-2851.20Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_LISMO3.061e-2857.94Fumarate hydratase class II OS=Listeria monocytoge... [more]
FUMC_BLOFL5.222e-2852.00Fumarate hydratase class II OS=Blochmannia florida... [more]
FUMC_STAS12.591e-2752.80Fumarate hydratase class II OS=Staphylococcus sapr... [more]
FUMC_PROMM3.385e-2752.76Fumarate hydratase class II OS=Prochlorococcus mar... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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