FC932255

Overview
NameFC932255
Unique NameFC932255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: ASPA_BACSU (Aspartate ammonia-lyase OS=Bacillus subtilis GN=ansB PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 65/126 (51.59%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIA 372
            R+ +NF I G +  + E ++ A  I+KK AA  NM+   L   IG+AI+QAA E+ EGK +D F +   Q G+GT  NMNANEVI NRA EI+GHK+G+ I + PN HVN SQS+ND FPT +HI+
Sbjct:   32 RASENFPITGYK--IHEEMINALAIVKKAAALANMDVKRLYEGIGQAIVQAADEILEGKWHDQFIVDPIQGGAGTSMNMNANEVIGNRALEIMGHKKGDYIHLSPNTHVNMSQSTNDVFPTAIHIS 155          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_MYCTU (Fumarate hydratase class II OS=Mycobacterium tuberculosis GN=fumC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.168e-25
Identity = 65/126 (51.59%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF I G      +  +RA G+LK   A+VN + GL  P    AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA      +G   +HPND VN SQSSNDTFPT  HIAA
Sbjct:   34 RAVENFPISGRGLERTQ--IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_MYCBO (Fumarate hydratase class II OS=Mycobacterium bovis GN=fumC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.168e-25
Identity = 65/126 (51.59%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF I G      +  +RA G+LK   A+VN + GL  P    AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA      +G   +HPND VN SQSSNDTFPT  HIAA
Sbjct:   34 RAVENFPISGRGLERTQ--IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_PROMA (Fumarate hydratase class II OS=Prochlorococcus marinus GN=fumC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.682e-24
Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RSL NF IG    +MP  ++ +   +K  AA VN   G LD      I+ A  E++ G  ++ FPL VWQTGSGTQ+NMN NEVI+N A+ + G+K G  + +HPNDHVNRSQS+ND FP  + IA
Sbjct:   29 RSLINFAIG--HNKMPMKLIYSIVQIKASAAIVNCRLGVLDKQRKNFILNACNEISNGMHDEQFPLSVWQTGSGTQTNMNVNEVISNIASHLNGNKLGSHEPLHPNDHVNRSQSTNDVFPAAIQIA 152          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_CORGL (Fumarate hydratase class II OS=Corynebacterium glutamicum GN=fumC PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.974e-24
Identity = 63/126 (50.00%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF I G      +  +RA G+LK   A+VN + G LD     AI+ A +E+A GK +  FP+ V+QTGSGT SNMN NEVIA+ A      K     VHPNDHVN  QSSNDTFPT  H+AA
Sbjct:   34 RAVENFPISGRGLESAQ--IRAMGLLKAACAQVNKDSGALDAEKADAIIAAGKEIASGKHDAEFPIDVFQTGSGTSSNMNTNEVIASIA------KANGVEVHPNDHVNMGQSSNDTFPTATHVAA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFT (Fumarate hydratase class II OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=fumC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.803e-24
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF I G    MP+  + A G +K  AAKVN E GL P ++ K I  AA +VA G+ +  FP+ ++QTGSGT SNMNANEVIA      L  +  +  +HPNDHVN  QSSND  PT + I+A
Sbjct:   35 RAIENFPISGRS--MPQGFIHALGFIKAAAAKVNAELGLLPKSMAKEIEAAALDVAAGRYDAEFPVDIYQTGSGTSSNMNANEVIAT-----LAMRATKGPIHPNDHVNLGQSSNDVVPTAIRISA 153          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFA (Fumarate hydratase class II OS=Xylella fastidiosa GN=fumC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.803e-24
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF I G    MP+  + A G +K  AAKVN E GL P  + K I  AA +VA G+ +  FP+ ++QTGSGT SNMNANEVIA      L  +  ++ +HPNDHVN  QSSND  PT + I+A
Sbjct:   35 RAIENFPISGRS--MPQGFIHALGFIKAAAAKVNAELGLLPKPMAKEIEAAALDVAAGRYDADFPVDIYQTGSGTSSNMNANEVIAT-----LAMRATKEPIHPNDHVNLGQSSNDVVPTAIRISA 153          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_COREF (Fumarate hydratase class II OS=Corynebacterium efficiens GN=fumC PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.738e-23
Identity = 63/126 (50.00%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 375
            R+++NF I G      +  +RA G+LK   A+VN + G LD A   AI+ A +E+A GK +  FP+ V+QTGSGT SNMN NEVIA+ A      K     VHPND VN  QSSNDTFPT  H+AA
Sbjct:   34 RAVENFPISGRGLESAQ--IRAMGLLKAACAQVNKDSGALDAAKADAIIAAGKEIATGKHDAEFPIDVFQTGSGTSSNMNTNEVIASIA------KANGTEVHPNDDVNMGQSSNDTFPTATHVAA 151          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.627e-23
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAA 378
            R++ NF + G+R  MP+  VRA  + K  AA+ N+    LD  +G+AI     ++ +     HFP+ V+QTGSGT SNMNANEV+A  A+  LG K     V+PNDHVN  QSSND  P+ +HI+AA
Sbjct:   28 RAVNNFPVSGQR--MPQAFVRALLLAKAAAARANVSLQQLDAPMGEAIADTCLQLLQEDFMQHFPVDVFQTGSGTSSNMNANEVVATLASRRLGGK-----VNPNDHVNCGQSSNDIIPSTIHISAA 147          
BLAST of FC932255 vs. ExPASy Swiss-Prot
Match: FUMC_PROMP (Fumarate hydratase class II OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fumC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.538e-22
Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGK-AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIA 372
            RS+ NF IG   E +P  ++ +  ++K+ AA  N + GL   + K  I++A  E+ +GK +  FPL +WQTGSGTQ+NMN NEVI+N AA       G    +HPND VN+SQS+NDTFP  + I+
Sbjct:   29 RSIINFSIG--EELIPIELIYSLTVIKRAAAISNFKLGLINNVKKDLIIEACTEILDGKHDSQFPLKIWQTGSGTQTNMNINEVISNIAALKTNSGLGSHHPIHPNDDVNKSQSTNDTFPAAIQIS 152          
The following BLAST results are available for this feature:
BLAST of FC932255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ASPA_BACSU4.887e-2651.59Aspartate ammonia-lyase OS=Bacillus subtilis GN=an... [more]
FUMC_MYCTU3.168e-2551.59Fumarate hydratase class II OS=Mycobacterium tuber... [more]
FUMC_MYCBO3.168e-2551.59Fumarate hydratase class II OS=Mycobacterium bovis... [more]
FUMC_PROMA2.682e-2449.21Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC_CORGL5.974e-2450.00Fumarate hydratase class II OS=Corynebacterium glu... [more]
FUMC_XYLFT7.803e-2448.41Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_XYLFA7.803e-2448.41Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_COREF1.738e-2350.00Fumarate hydratase class II OS=Corynebacterium eff... [more]
FUMC1_PSEAE8.627e-2346.46Fumarate hydratase class II 1 OS=Pseudomonas aerug... [more]
FUMC_PROMP9.538e-2245.24Fumarate hydratase class II OS=Prochlorococcus mar... [more]

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Properties
Property NameValue
Genbank descriptionC34206D07EF PostHarveN Citrus clementina cDNA clone C34206D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932255 ID=FC932255; Name=FC932255; organism=Citrus clementina; type=EST; length=379bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAA
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