FC932266

Overview
NameFC932266
Unique NameFC932266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_ECO7I (Flavoprotein wrbA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 91/199 (45.73%), Postives = 127/199 (63.82%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYSMYGH+E +A  + +GAS V+G E  + +VPET+P ++  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_ECO55 (Flavoprotein wrbA OS=Escherichia coli (strain 55989 / EAEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 91/199 (45.73%), Postives = 127/199 (63.82%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYSMYGH+E +A  + +GAS V+G E  + +VPET+P ++  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_ECO45 (Flavoprotein wrbA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 91/199 (45.73%), Postives = 127/199 (63.82%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYSMYGH+E +A  + +GAS V+G E  + +VPET+P ++  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_ECO27 (Flavoprotein wrbA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 91/199 (45.73%), Postives = 127/199 (63.82%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYSMYGH+E +A  + +GAS V+G E  + +VPET+P ++  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_ECO24 (Flavoprotein wrbA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44
Identity = 91/199 (45.73%), Postives = 127/199 (63.82%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYSMYGH+E +A  + +GAS V+G E  + +VPET+P ++  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_SALTY (Flavoprotein wrbA OS=Salmonella typhimurium GN=wrbA PE=3 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            K+ ++YYSMYGH+E +A  + +GA  V+G E  + +VPET+P E+  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK  G  +              +  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIFAKAGGKTQN-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGSLYGK-LGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_SALPC (Flavoprotein wrbA OS=Salmonella paratyphi C (strain RKS4594) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            K+ ++YYSMYGH+E +A  + +GA  V+G E  + +VPET+P E+  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK  G  +              +  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIFAKAGGKTQN-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGSLYGK-LGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_GEOMG (Flavoprotein wrbA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 99/203 (48.77%), Postives = 125/203 (61.58%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA--PPKS--DVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV I +YSMYGH+ ++AE + +G   V G EA L +VPETLP +VL KM A  P K+   +P+ T +ELA AD  +FG+PTRFG M  Q + FLDATGGLW    L GK  G+F              LT  T L+H GM+ V + Y F AG   ++++ GGSPYGA T A G G R P+E EL  A +QGK+IA I  KLKG
Sbjct:    2 KVLIPFYSMYGHIYRMAEAVAEGVREVSGAEAVLRRVPETLPTDVLQKMGAVEPQKAFAHIPVCTVDELAAADAIIFGTPTRFGNMCGQMRQFLDATGGLWVKGGLVGKAGGVFTSSATQHGGQESTILTFHTFLLHQGMVLVGLPYAF-AGQMRIDEITGGSPYGASTIAGGQGERLPSENELAGARYQGKYIAEIAAKLKG 203          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_ESCF3 (Flavoprotein wrbA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 91/199 (45.73%), Postives = 127/199 (63.82%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            KV ++YYSMYGH+E +A  + +GAS V+G E  + +VPET+P ++  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVIVKRVPETMPPQLFEKAGGKTQT-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of FC932266 vs. ExPASy Swiss-Prot
Match: WRBA_SALSV (Flavoprotein wrbA OS=Salmonella schwarzengrund (strain CVM19633) GN=wrbA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.686e-43
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 2
Query:   89 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGSPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGICKKLKG 682
            K+ ++YYSMYGH+E +A  + +GA  V+G E  + +VPET+P E+  K     ++  P+ TP ELA+ D  +FG+PTRFG M+ Q + FLD TGGLW +  L GK  G  +              +  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+  KL G
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIFAKAGGKTQN-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGK-LGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
The following BLAST results are available for this feature:
BLAST of FC932266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_ECO7I9.885e-4445.73Flavoprotein wrbA OS=Escherichia coli O7:K1 (strai... [more]
WRBA_ECO559.885e-4445.73Flavoprotein wrbA OS=Escherichia coli (strain 5598... [more]
WRBA_ECO459.885e-4445.73Flavoprotein wrbA OS=Escherichia coli O45:K1 (stra... [more]
WRBA_ECO279.885e-4445.73Flavoprotein wrbA OS=Escherichia coli O127:H6 (str... [more]
WRBA_ECO249.885e-4445.73Flavoprotein wrbA OS=Escherichia coli O139:H28 (st... [more]
WRBA_SALTY1.291e-4344.22Flavoprotein wrbA OS=Salmonella typhimurium GN=wrb... [more]
WRBA_SALPC1.291e-4344.22Flavoprotein wrbA OS=Salmonella paratyphi C (strai... [more]
WRBA_GEOMG1.291e-4348.77Flavoprotein wrbA OS=Geobacter metallireducens (st... [more]
WRBA_ESCF31.291e-4345.73Flavoprotein wrbA OS=Escherichia fergusonii (strai... [more]
WRBA_SALSV1.686e-4344.22Flavoprotein wrbA OS=Salmonella schwarzengrund (st... [more]

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Properties
Property NameValue
Genbank descriptionC34206F05EF PostHarveN Citrus clementina cDNA clone C34206F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932266 ID=FC932266; Name=FC932266; organism=Citrus clementina; type=EST; length=702bp
GGAATCCATTTTTTCAAACTTTTTTTTTATATATAGAGAGAAAAGTAACA
GAGACTCGTCGAAGAAGACTCCTTAAGAGATGGCAACCAAAGTGTATATT
GTGTACTATTCCATGTATGGACATGTAGAGAAACTGGCAGAAGAGATAAA
GAAAGGAGCTTCATCTGTTGAGGGTGTTGAAGCCAAATTATGGCAGGTCC
CTGAGACACTACCTGAGGAGGTACTTGGTAAGATGAGTGCACCACCAAAG
AGTGATGTACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTT
TGTTTTTGGCTCCCCAACAAGATTTGGAATGATGGCTGCTCAATTTAAAG
CATTTTTAGATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGC
AAACCTGCTGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGA
GACTACAGCGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATAT
TTGTTCCTATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAA
GTGAAAGGTGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGATGGCTC
GAGACAGCCAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAAC
ACATTGCGGGCATTTGCAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAA
TT
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