FC932271

Overview
NameFC932271
Unique NameFC932271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 45/132 (34.09%), Postives = 76/132 (57.58%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS---------------------SSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 347
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S                     +S I++ L + +     +P+P+ S    L   ++++Y K+   ++ + R+ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTS--YVLTPHTEEKYKKINEEFDNMMRNHK 130
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALE 281
            MGR + ++ RI ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFS+  KLY++ +S+ + + L +Y +  Y  P  +++ +  +E
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQY-ASTDMDRVLLKYTE--YNEPHESLTNKNIIE 86
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREA 275
            MGR + +++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ + K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREA 275
            MGR + +++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ + K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREA 275
            MGR + +++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ + K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREA 275
            MGR + +++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ + K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS---------------------SSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 347
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S                     +S I++TL +       +P+P+          S+ +Y K+    + +   QR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQR 132
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS---------------------SSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 347
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S                     +S I++TL +       +P+P+          S+ +Y K+    + +   QR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQR 132
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS---------------------SSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 347
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S                     +S I++TL +       +P+P+          S+ +Y K+    + +   QR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQR 132
[Close]
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS---------------------SSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 347
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S                     +S I++TL +       +P+P+          S+ +Y K+    + +   QR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQR 132
The following BLAST results are available for this feature:
BLAST of FC932271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2A_BOVIN4.148e-1534.09Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2_DROME9.240e-1546.07Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA9.240e-1549.43Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT9.240e-1549.43Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE9.240e-1549.43Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN9.240e-1549.43Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2C_PONAB2.058e-1434.85Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_MOUSE2.058e-1434.85Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN2.058e-1434.85Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN2.058e-1434.85Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionC34206G02EF PostHarveN Citrus clementina cDNA clone C34206G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932271 ID=FC932271; Name=FC932271; organism=Citrus clementina; type=EST; length=687bp
GAGAGGAGAAGAAAATGGGTAGGGGTAGGTTTGAGTTGAAGAGGATAGAG
AACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATT
GAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCA
TCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGC
ATACTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGA
ACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAAT
ATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAAT
CTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACT
TGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTC
AGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTG
AGCGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGC
CGATTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTC
AATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAACCAGCTCACC
TCAGGGCGATACTTCTTTCACGCCTTGGATGTGAACC
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