FC932271

Overview
NameFC932271
Unique NameFC932271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERY 224
            MGR +  +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  + K L RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCN 236
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ + K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCN 236
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ + K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCN 236
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ + K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCN 236
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ + K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALE 281
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ + + L +Y +  Y  P  + +  + LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 34/60 (56.67%), Postives = 49/60 (81.67%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 194
            MGR + ++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ SS
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASS 60          
The following BLAST results are available for this feature:
BLAST of FC932271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
SRFC_DICDI2.688e-1452.86Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2A_XENLA3.511e-1452.70Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB3.511e-1452.70Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE3.511e-1452.70Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK3.511e-1452.70Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN1.334e-1344.94Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE5.070e-1356.67Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC34206G02EF PostHarveN Citrus clementina cDNA clone C34206G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932271 ID=FC932271; Name=FC932271; organism=Citrus clementina; type=EST; length=687bp
GAGAGGAGAAGAAAATGGGTAGGGGTAGGTTTGAGTTGAAGAGGATAGAG
AACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATT
GAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCA
TCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGC
ATACTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGA
ACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAAT
ATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAAT
CTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACT
TGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTC
AGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTG
AGCGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGC
CGATTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTC
AATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAACCAGCTCACC
TCAGGGCGATACTTCTTTCACGCCTTGGATGTGAACC
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