FC932271

Overview
NameFC932271
Unique NameFC932271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15455 contig Ccv1_Contig15455:8..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.333e-42
Identity = 97/187 (51.87%), Postives = 131/187 (70.05%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQ 569
            MGRG+ E+KRIENKI RQVTF+KR++GLLKKAYELSVLCDAEV+LIIFS  GKLYEF S+  + +T+ERY +C     + N+   + LE +   +QE  KLK +YE+L R+ RNL+GE+L  ++ KEL++LERQL+ +L   R  +TQ M++ + EL+ KE+ L + N  LK  T      DF G Q
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF-SNVGVGRTIERYYRC-----KDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLET---EDHDFKGFQ 178          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.980e-42
Identity = 90/172 (52.33%), Postives = 125/172 (72.67%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRGR +LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS +GKL+E+ + S + + LERY++ ++ A    V        S   E+ KLKAR E LQR+Q++ +GE+L  LN KEL++LE QLD +LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSF-AERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.980e-42
Identity = 91/175 (52.00%), Postives = 129/175 (73.71%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRGR +LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ + S + + LERY +  Y   +    +VS  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QLD ++K IRS + Q M ++++ LQ K++ L + N +L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKK 171          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.789e-42
Identity = 94/192 (48.96%), Postives = 134/192 (69.79%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLRHADFAGLQ 569
            MGRGR +LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVAL+IFS++GKL+E+ + S + K LERY +  Y   +    ++S  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N    K +K+R     H +   +Q
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQLIQ 188          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.865e-40
Identity = 88/172 (51.16%), Postives = 123/172 (71.51%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            MGRGR +LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS +GKL+E+ + S + + LERY++ ++ A +  V        S   E  KLKAR E LQR+++  +GE+L  LN KEL++LE QL  +LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSF-AEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.198e-38
Identity = 86/174 (49.43%), Postives = 120/174 (68.97%), Query Frame = 3
Query:    9 KKMGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            KK+GRG+ E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS RG+LYE+ +++S+  T+ERY+K    A  P  S  EA     QQE  KL+ +   +Q S R+++GE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ +
Sbjct:   14 KKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNP-PSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAK 185          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 83/192 (43.23%), Postives = 125/192 (65.10%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNY----GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLME 578
            MGRG+ E+KRIENK +RQVTF KRRNGLLKKAYEL++LCDAE+ALI+FS+RG+LYEF + +S   T+ERY+K +      AP  +V++ +      QQE  K++ + + LQ + R+L+GE +G + +KEL+SLE +L+  + +IRS + + +   +  +Q +E  L   N  L+ +      A+    Q  E
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYF----QQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQAAE 188          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 83/175 (47.43%), Postives = 121/175 (69.14%), Query Frame = 3
Query:    6 EKKMGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530
            ++K+GRG+ E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +++S+  T+ERY+K    +P  + S  EA     QQE  KL+    ++Q++ RN++GE LG L  ++L+ LE +L+  + +IRS + + +   +  +Q KE  L   N+ L+ +
Sbjct:   14 QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNSVKGTIERYKKACTDSPNTS-SVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAK 186          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.768e-38
Identity = 89/221 (40.27%), Postives = 134/221 (60.63%), Query Frame = 3
Query:   15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLNQLTSGRYFFHAL 677
            MGRG+ E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ ++++I  T+ERY+K    +   + + +E      QQE  KL+ + + +Q S RNL+G+ L  L+ KEL+ +E +L+ ++ +IRS + + +L  +   Q +E  L   N  L+ +   +        Q++ G ++N ++              L S  YF H++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNNIRSTIERYKKACSDSTNTS-TVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIE-------------ALASRNYFAHSI 206          
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.014e-37
Identity = 91/205 (44.39%), Postives = 132/205 (64.39%), Query Frame = 3
Query:    6 EKKMGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQ--LMEGYQVNTLQLNP 611
            ++K+GRG+ E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FSNRG+LYE+ +++S+  T+ERY+K C+  +   +VS  EA     QQE  KL+A+   L    RN++GE L  +  KEL++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ +      A     Q  LM G   N  +L P
Sbjct:   14 QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEY-ANNSVKATIERYKKACSDSSNTGSVS--EANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVP 215          
The following BLAST results are available for this feature:
BLAST of FC932271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL13_ARATH2.333e-4251.87Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SOLTU3.980e-4252.33Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH3.980e-4252.00Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL6.789e-4248.96Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_SOLCO4.865e-4051.16Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL1_ARATH1.198e-3849.43Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD21_ORYSJ4.554e-3843.23MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AG_PANGI4.554e-3847.43Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AGL11_ARATH7.768e-3840.27Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AG_SOLLC1.014e-3744.39Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]

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Properties
Property NameValue
Genbank descriptionC34206G02EF PostHarveN Citrus clementina cDNA clone C34206G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932271 ID=FC932271; Name=FC932271; organism=Citrus clementina; type=EST; length=687bp
GAGAGGAGAAGAAAATGGGTAGGGGTAGGTTTGAGTTGAAGAGGATAGAG
AACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATT
GAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCA
TCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGC
ATACTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGA
ACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAAT
ATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAAT
CTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACT
TGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTC
AGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTG
AGCGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGC
CGATTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTC
AATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAACCAGCTCACC
TCAGGGCGATACTTCTTTCACGCCTTGGATGTGAACC
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