FC932271
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 2.339e-34 Identity = 84/179 (46.93%), Postives = 115/179 (64.25%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 551 M RGR ELKRIEN +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+ Y N + + + L L + EAL S+R +LGE L + +EL LE +L+ SL IR +T+ + + +L+ KE+ L + N+ L+ + L A Sbjct: 1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAA 177
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34 Identity = 88/189 (46.56%), Postives = 118/189 (62.43%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSILKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQ 569 MGRG+ E+KRIEN NRQVTF+KRR GLLKKA+ELSVLCDAE+ LIIFS+ GKL+E+ S SSS+ K +ERYQK VS E +Q E ++K E LQ + R ++GE+L L EL L +QL+ + ++RS + Q ML L L+ KE++L + N L R + + A G+Q Sbjct: 1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQK---------VSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHL-CRLLAEQQAAVEGVQ 179
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.980e-33 Identity = 80/175 (45.71%), Postives = 120/175 (68.57%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530 M RG+ ++KRIEN +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF +SS++ T++RY + + VS + E + Q E + + E L+ S+R LLGE +G + +EL+ +E+QL+ S+K IR+ +TQ + + +L+ KE+ L+ N+ L ++ Sbjct: 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF-ASSNMQDTIDRYLR----HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 7.524e-33 Identity = 77/178 (43.26%), Postives = 115/178 (64.61%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 545 MGRG+ ++RI+N +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFS+ G+LYE+ SS+S+ ++RY K E A EL Q+E L+ + LQ + R L+GE+L LN KEL+SLE QL++SL+ +R+ + ++D + EL K L+ + N L ++ +R Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGK---SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIR 174
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.283e-32 Identity = 75/175 (42.86%), Postives = 115/175 (65.71%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQR-SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTM 536 MGRG+ E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+ T+ERY+K N A E QQE KL+ + +LQ + R ++G+ + ++ ++L+ +E +L+ + +IR+ + + + + +Q +E L N L+ + + Sbjct: 1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKSTVERYKKANSDTSNSGTVA-EVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVV 173
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.283e-32 Identity = 84/175 (48.00%), Postives = 121/175 (69.14%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQ---KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 530 M RG+ ++KRIEN +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF S+S+ KT+ERY+ K N G N + ++ +E + + L + EAL+ +R LLGE+L + +EL SLE +L+ SL IR +T+ + + + +L+ KE L + N+ L+++ Sbjct: 1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASAST-QKTIERYRTYTKENIG----NKTVQQDIE-QVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 8.318e-32 Identity = 71/160 (44.38%), Postives = 112/160 (70.00%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSIL-KTLERYQKCNYGAPEPNVSAR-EALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 488 MGRG+ +++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS +G L+ + SS + + + LE+Y + + NV LE S +++KL+ R EAL++SQRNL+G+EL L ++++ LE Q+D SL IRS + + +++ T L+ K Sbjct: 1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKK 160
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31 Identity = 80/177 (45.20%), Postives = 111/177 (62.71%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 545 MGRG+ E+KRIEN +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS GKL+EF SS+S+ KTL RY + P ++ + + + L LK LQ ++ G+ L L+ KEL+ LE+QL+ SL +R + + L E + KEQ N+TL+++ LR Sbjct: 1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDL-LKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQELR 175
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30 Identity = 78/200 (39.00%), Postives = 117/200 (58.50%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKC---NYGAPEPNVSAREALE---LSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL----KQRTMTLRHADFAGLQLMEGY 584 M RG+ +LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E + ++ +++Y KC G+ +A+E L+ L + E LK E LQ+ + G G +N +EL LE+ L+ + QIRS + ML + L++KE +L NK L ++ ++ A+FA ++ Y Sbjct: 1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNSILDANFAVMETNYSY 200
BLAST of FC932271 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.049e-30 Identity = 73/158 (46.20%), Postives = 106/158 (67.09%), Query Frame = 3 Query: 15 MGRGRFELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSILKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 488 MGRG+ E+KRI+N +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+ +LY+F +SSS+ +ERY + P ++A +L QQE L+ + LQ R LLG++L L+ ++L++LE +L+MSLK IR + M+D + EL K Sbjct: 1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDF-ASSSMKSIIERYNETKED-PHQTMNASSEAKL-WQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155 The following BLAST results are available for this feature:
BLAST of FC932271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932271 ID=FC932271; Name=FC932271; organism=Citrus clementina; type=EST; length=687bpback to top |