FC932272

Overview
NameFC932272
Unique NameFC932272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 58/203 (28.57%), Postives = 94/203 (46.31%), Query Frame = 1
Query:   91 KEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLN----LSVVTSDSSL----EYLLLHVPNRSILVVEDIDCSIKLQNRESQKGDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKI-TIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDINDHDLYCHIEKLMEKVKVSPAEVAGELMKA 672
            KE + K+G    +G LLYGPPGTGK+ +  A A   N     L     + +   D +      +LL    +  I+ +++ID         +++ D      R  Q T+  LLN +DG      D++I  I  TN  D +DPAL+R+GR+DR I   + T    ++     L I+   +  + +   E++  S  +  G  +KA
Sbjct:  193 KEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAI------GTKRFDSEVSGDREVQRTMLELLNQLDGF---SSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT----EEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKA 382          
BLAST of FC932272 vs. ExPASy Swiss-Prot
Match: YL572_MIMIV (Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L572 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 56/187 (29.95%), Postives = 95/187 (50.80%), Query Frame = 1
Query:  172 LIAAMANYMNYDIYNLNLSVVTSDSSLEYLLLHVP-NRSILVVEDIDCS---IKLQNRESQK-----------------GDEPADSYRGPQVTLAGLLNAIDGLLCCCGDEKITIFTTNYKDRIDPALLRAGRMDRHINLSYCTFSTFKQLAANYLDIN-DHDLYCHIEKLMEKVKVSPAEVAGELM 666
            +I A++ +    I+ L L+ +  D+ L  LL  V    +ILV+EDIDC+   +K + +E +                   D+     +  ++TL+G+LN++DG+    G  +I I TTN+ + +DPAL+R GR+D  I  S C      ++  N+   N D D+   + K+   +  SPA V+G L+
Sbjct:    1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEEETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYGKNADSDI---LSKIPSDI-YSPAHVSGLLL 181          
The following BLAST results are available for this feature:
BLAST of FC932272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PS6AB_ARATH2.685e-1128.5726S protease regulatory subunit 6A homolog B OS=Ar... [more]
YL572_MIMIV5.982e-1129.95Putative AAA family ATPase L572 OS=Acanthamoeba po... [more]

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Properties
Property NameValue
Genbank descriptionC34206G04EF PostHarveN Citrus clementina cDNA clone C34206G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932272 ID=FC932272; Name=FC932272; organism=Citrus clementina; type=EST; length=672bp
CTCGACCATCCGATGACCTTTGGTACGTTGGTTATGGACGGCGACTTGAA
AGAGACTGTGCTGAACGATCTTGATTGTTTCAGAAGAGGGAAGGAGTATT
ACAGGAAGATCGGTAAAGTTTGGAAGAGAGGTTACTTGTTGTACGGGCCA
CCGGGAACCGGCAAGTCCAGTTTGATTGCTGCTATGGCTAATTATATGAA
TTATGATATTTACAACTTGAACTTATCGGTTGTCACTTCCGATTCTTCAC
TTGAGTACTTGCTGCTCCATGTGCCTAACCGTTCAATTCTTGTTGTCGAG
GATATCGACTGTTCTATCAAACTACAGAATCGCGAGTCTCAGAAGGGGGA
TGAACCAGCTGATTCCTATCGGGGACCTCAGGTGACTCTTGCTGGACTAC
TGAATGCCATTGATGGTCTGCTCTGCTGCTGTGGAGACGAAAAGATCACT
ATCTTCACTACTAACTACAAAGATAGAATCGACCCTGCATTACTGCGAGC
AGGGCGTATGGACAGGCACATAAACCTCTCCTATTGTACATTCTCCACCT
TCAAGCAGCTGGCAGCCAACTACTTGGATATTAATGATCATGATCTTTAT
TGTCACATTGAAAAACTTATGGAAAAGGTCAAAGTTTCCCCTGCTGAGGT
TGCCGGTGAACTCATGAAGGCC
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