FC932273

Overview
NameFC932273
Unique NameFC932273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14547 contig Ccv1_Contig14547:7..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_AZOBR (Anthranilate synthase component 2 OS=Azospirillum brasilense GN=trpG PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTV-LELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            +++IDNYDSFTYNL  Y+GELG   +V RND LTVEE     P G+++SPGP  P  +GI L  +       VPL GVC+G Q IG+ FGG +VR+P+  MHGK   +++  +G
Sbjct:    2 LLLIDNYDSFTYNLVHYLGELGAELDVRRNDSLTVEEAMALRPEGIVLSPGPCDPDKAGICLPLIDAAAKAAVPLMGVCLGHQAIGQPFGGTVVRAPV-PMHGKVDRMFHQGRG 114          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: PABA_ECOLI (Para-aminobenzoate synthase glutamine amidotransferase component II OS=Escherichia coli (strain K12) GN=pabA PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 58/124 (46.77%), Postives = 83/124 (66.94%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++IDNYDSFT+NL QY  ELG    V RND LT+ ++    P+ ++ISPGP TP ++GISL  +      +P+ GVC+G Q + +AFGGK+VR+   VMHGK+S + ++    +G+  GL NP
Sbjct:    2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRA-AKVMHGKTSPITHN---GEGVFRGLANP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: PABA_SALTY (Para-aminobenzoate synthase glutamine amidotransferase component II OS=Salmonella typhimurium GN=pabA PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 58/124 (46.77%), Postives = 82/124 (66.13%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++IDNYDSFT+NL QY  ELG   +V RND LT+  +   NP+ ++ISPGP TP D+GISL  +      +P+ GVC+G Q + +AFG  +VR+   VMHGK+S V ++ +   G+  GL +P
Sbjct:    2 ILLIDNYDSFTWNLYQYFCELGAEVQVRRNDALTLAHIDALNPQKIVISPGPCTPNDAGISLAVIRHYAGRIPMLGVCLGHQAMAQAFGASVVRA-AKVMHGKTSPVTHNGQ---GVFRGLPSP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_CLOTM (Anthranilate synthase component 2 (Fragment) OS=Clostridium thermocellum GN=trpG PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 47/87 (54.02%), Postives = 69/87 (79.31%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEA 582
            I++IDNYDSFTYNL QY+GE+  + EVYRND++T+E+++  NP  ++ISPGPG P+D+GI ++ + + G  +P+ GVC+G Q IGEA
Sbjct:    5 ILIIDNYDSFTYNLYQYVGEISPNIEVYRNDKITLEKIEEMNPTHIIISPGPGFPKDAGICIEAIRKFGRYIPILGVCLGHQAIGEA 91          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_SCHPO (Anthranilate synthase component 2 OS=Schizosaccharomyces pombe GN=trp1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  313 KNPIIVIDNYDSFTYNLCQYMGELG--YHFEVYRNDELTVEELKRKNPRGVLISPGPGTP-QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            + PI++IDNYDSFT+N+ QY+  L   Y   V+RNDE+TV+EL++ NP  +++SPGPG P +D GI  + +      +P+ GVCMGLQCI E  GGK V S   ++HGK S + +D  G
Sbjct:   25 ERPIVMIDNYDSFTWNVVQYLSNLEKRYPIMVFRNDEITVDELEKLNPLKLVLSPGPGHPARDGGICNEAISRFAGKIPILGVCMGLQCIFETMGGK-VDSAGEIIHGKVSKINHDGLG 142          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: PABA_SERMA (Para-aminobenzoate synthase glutamine amidotransferase component II OS=Serratia marcescens GN=pabA PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            +++IDNYDSFTYNL QY  ELG    V RNDEL + +++R  P+ ++ISPGP TP ++GIS+  +      +P+ GVC+G Q +G+AFG ++VR+   VMHGK+S + +      G+  GL +P
Sbjct:    2 LLLIDNYDSFTYNLYQYFCELGAEVVVKRNDELQLTDIERLAPQHLVISPGPCTPNEAGISVAAIRHFAGKLPILGVCLGHQALGQAFGAEVVRA-RAVMHGKTSAIRHLGV---GVFRGLSDP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PENCH (Anthranilate synthase component 2 OS=Penicillium chrysogenum GN=trpC PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            +I+IDNYDSFT+N+ QY+   G    VYRNDE+TVE+L  K P  ++ISPGPG P  D+GIS   +      VP+FGVCMG QC+  +FGGK+  +   ++HGK+S + +D KG
Sbjct:   24 VILIDNYDSFTWNIYQYLVLEGATVTVYRNDEVTVEDLVAKKPTQLVISPGPGHPDTDAGISNAVIKHFSGKVPIFGVCMGQQCMITSFGGKVDVTG-EILHGKTSELKHDSKG 136          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_METJA (Anthranilate synthase component II OS=Methanocaldococcus jannaschii GN=trpG PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 55/124 (44.35%), Postives = 88/124 (70.97%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            ++VIDN DSF +NL QY+G LGY  ++  N ++T++E+K+ NP  ++ISPGP TP+++G  ++ + E+   +P+ GVC+G QCI EAFGG++ R+   VMHGK+SL+ +D    +G+   + NP
Sbjct:    6 VLVIDNIDSFVWNLVQYVGTLGYKVKLVDN-KITLDEIKKINPDRIIISPGPKTPKEAGNCIKIIQEV--DIPILGVCLGHQCIVEAFGGEVGRAK-RVMHGKASLINHD---GEGIFKDIPNP 122          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: PABA_KLEAE (Para-aminobenzoate synthase glutamine amidotransferase component II OS=Klebsiella aerogenes GN=pabA PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++IDNYDSFT+NL QY  ELG    V RNDELT+ ++    P  ++ISPGP TP +SGISL  +       P+ GVC+G Q I + FG  IVR+   VMHGK+S V +  +   G+  GL NP
Sbjct:    2 ILLIDNYDSFTWNLYQYFCELGAEVLVRRNDELTLADIISLAPAKIVISPGPCTPDESGISLAAIRHFSGQTPILGVCLGHQAIAQVFGAAIVRA-AKVMHGKTSPVSHTGQ---GVFLGLNNP 121          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PHYBL (Anthranilate synthase component 2 OS=Phycomyces blakesleeanus GN=trp1 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  325 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTP-QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            ++IDNYDSFTYN+ QY+   G    VYRND++TV+E+ + NP  ++ISPGPG P  D+G+S   +      +P+ G+CMG QCI E FGG +  +   ++HGK+S + +D +G
Sbjct:    4 LLIDNYDSFTYNVYQYLCSQGADVVVYRNDKITVDEIVKLNPVNIVISPGPGHPSHDAGVSRDVISYFAGKLPILGICMGEQCIFEVFGGTVSYAG-DILHGKTSTIKHDNRG 115          
The following BLAST results are available for this feature:
BLAST of FC932273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TRPG_AZOBR5.925e-2549.12Anthranilate synthase component 2 OS=Azospirillum ... [more]
PABA_ECOLI5.925e-2546.77Para-aminobenzoate synthase glutamine amidotransfe... [more]
PABA_SALTY7.738e-2546.77Para-aminobenzoate synthase glutamine amidotransfe... [more]
TRPG_CLOTM1.724e-2454.02Anthranilate synthase component 2 (Fragment) OS=Cl... [more]
TRPG_SCHPO2.940e-2447.90Anthranilate synthase component 2 OS=Schizosacchar... [more]
PABA_SERMA5.016e-2445.16Para-aminobenzoate synthase glutamine amidotransfe... [more]
TRPG_PENCH6.550e-2450.00Anthranilate synthase component 2 OS=Penicillium c... [more]
TRPG_METJA1.117e-2344.35Anthranilate synthase component II OS=Methanocaldo... [more]
PABA_KLEAE1.117e-2348.39Para-aminobenzoate synthase glutamine amidotransfe... [more]
TRPG_PHYBL1.459e-2345.13Anthranilate synthase component 2 OS=Phycomyces bl... [more]

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Properties
Property NameValue
Genbank descriptionC34206G05EF PostHarveN Citrus clementina cDNA clone C34206G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932273 ID=FC932273; Name=FC932273; organism=Citrus clementina; type=EST; length=694bp
GGCTCAGTTTTTTGTTGTCTTTGAAGTTAAAAAGCGCCTTAGTTTCATAT
TCTCAGTCTCGCTCTCTCCTCTCTAGCAACAATGGCGGCAATGGTTTCGC
AGTCAACTCTCATTCAAACAAAACCGTCTCTCTCTTTAAAACCCTCTCAA
CGGTTTCGACCCAATCGTCTCTCTGCAATCCCTGAGCCTTCTCCAGGGCT
GAGGTTGGGGGCTAAGAAGGGAAATGGGGCTGTAAAGTTGTCAATGGCTG
TGGCAGAGGCAGTACCCATTTCGAAGTCTTTATATTTGGATGATAAGAAG
AGCAAGAATAATAAAAATCCCATCATTGTTATTGATAATTATGATAGTTT
CACTTACAATCTCTGCCAGTATATGGGCGAGCTTGGTTATCACTTTGAGG
TTTATCGGAATGATGAATTAACTGTGGAGGAGTTAAAACGGAAAAATCCT
AGAGGAGTGCTTATATCCCCTGGGCCGGGCACACCTCAAGATTCTGGAAT
ATCATTGCAGACTGTTTTGGAACTTGGACCTACTGTGCCTCTGTTTGGTG
TTTGTATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAGATTGTG
CGTTCTCCGCTTGGTGTCATGCATGGAAAAAGTTCTCTTGTGTATTATGA
TGAGAAAGGGGAGGATGGCTTGCTTGCTGGACTATNCAATCCTT
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