FC932273

Overview
NameFC932273
Unique NameFC932273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14547 contig Ccv1_Contig14547:7..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_NEUCR (Anthranilate synthase component 2 OS=Neurospora crassa GN=trp-1 PE=4 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTP-QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            +I+IDNYDSFT+N+ QY+   G    V+RND++T++EL  KNP  ++ISPGPG P  DSGIS   +      +P+FGVCMG QCI + +GG +  +   ++HGK+S + +D KG
Sbjct:   26 LILIDNYDSFTWNVYQYLVLEGAKVTVFRNDQITIDELIAKNPTQLVISPGPGHPGTDSGISRDAIRHFAGKIPIFGVCMGQQCIFDVYGGDVCFAG-EILHGKTSPLRHDGKG 138          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_ASPNG (Anthranilate synthase component 2 OS=Aspergillus niger GN=trpC PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            +I+IDNYDSFT+N+ QY+   G    V+RND++T+EEL  K P  ++ISPGPG P+ D+GIS   +      +P+FGVCMG QCI   FGGK+  +   ++HGK+S + +D KG
Sbjct:   26 VILIDNYDSFTWNVYQYLVLEGATVNVFRNDQITLEELIAKKPTQLVISPGPGHPETDAGISSAAIQYFSGKIPIFGVCMGQQCIITCFGGKVDVTG-EILHGKTSPLKHDGKG 138          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_SULSO (Anthranilate synthase component II OS=Sulfolobus solfataricus GN=trpG PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.242e-23
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  325 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTP---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSS 636
            ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPGTP   +D G+SL  +  LG   P+ GVC+G Q IG AFG KI R    V HGK S
Sbjct:    5 LIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRIIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKI-RRARKVFHGKIS 110          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_EMENI (Anthranilate synthase component 2 OS=Emericella nidulans GN=trpC PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 53/114 (46.49%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            +I+IDNYDSFT+N+ QY+   G    V RNDE+++EEL  K P  +++SPGPG P+ D+GIS   +      +P+FGVCMG QCI  +FGGK+  +   ++HGK+S++ +D +G
Sbjct:   26 VILIDNYDSFTWNVYQYLVLEGATVTVIRNDEISLEELIAKKPTQLVVSPGPGHPKSDAGISNAAIQYFAGKIPIFGVCMGQQCIHHSFGGKVDVTG-EILHGKTSVLKHDGRG 138          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_YEAST (Anthranilate synthase component 2 OS=Saccharomyces cerevisiae GN=TRP3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 51/114 (44.74%), Postives = 77/114 (67.54%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            +++IDNYDSFT+N+ +Y+ + G    VYRND +TV E+   NP  +LISPGPG P+ DSGIS   +      +P+FG+CMG QC+ + FGG++  +   ++HGK+S + +D  G
Sbjct:   14 VVLIDNYDSFTWNVYEYLCQEGAKVSVYRNDAITVPEIAALNPDTLLISPGPGHPKTDSGISRDCIRYFTGKIPVFGICMGQQCMFDVFGGEVAYAG-EIVHGKTSPISHDNCG 126          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_MYCTU (Anthranilate synthase component 2 OS=Mycobacterium tuberculosis GN=trpG PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPT-VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I+V+DNYDSF +NL QY+G+LG   EV+RND+  L+ E        GVL+SPGPGTP+ +G S+  V        PL GVC+G Q IG AFG  + R+P  ++HGK+S V++      G+L GL +P
Sbjct:    3 ILVVDNYDSFVFNLVQYLGQLGIEAEVWRNDDHRLSDEAAVAGQFDGVLLSPGPGTPERAGASVSIVHACAAAHTPLLGVCLGHQAIGVAFGATVDRAP-ELLHGKTSSVFHTNV---GVLQGLPDP 125          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_ASPAW (Anthranilate synthase component 2 OS=Aspergillus awamori GN=trpC PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  307 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            N  + +I+IDNYDSFT+N+  Y+   G    V+RND++T+EEL  K P  ++ISPGPG P+ D+GIS   +      +P+FGVCMG QCI   FGGK+  +   ++HGK+S + +D KG
Sbjct:   21 NTASNVILIDNYDSFTWNV--YLVLEGATVNVFRNDQITLEELIAKKPTQLVISPGPGHPETDAGISSAAIQYFSGKIPIFGVCMGQQCIITCFGGKVDVTG-EILHGKTSALKHDGKG 136          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_LEPBI (Anthranilate synthase component II OS=Leptospira biflexa GN=trpG PE=4 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGEL------GYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDS---GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE-DGLLAGL 684
            ++++DNYDSFT+NL Q +GE+       +  +V RNDE   E +K  N   ++ISPGPG P D    G+S   + ELG T P+ G+C+G+Q +   FGG++VR+ +  MHGK S + +D KG   GL  G+
Sbjct:    3 VLILDNYDSFTFNLYQIVGEILEEREKPFQLDVIRNDEKPFEWIKSANYDKIIISPGPGHPADPAYFGVSADILKELGKTPPVLGICLGMQGMATVFGGEVVRANI-AMHGKLSPIEHDGKGVFSGLTQGI 132          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PHACH (Anthranilate synthase component 2 OS=Phanerochaete chrysosporium GN=TRPC PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            I++IDN+DSFT+NL Q +  LG    V RND +    + +   + +++SPGPG PQ DSGIS + +      VP+ GVCMGL+C+ + FGG+I  +   +MHGK S + +D +G
Sbjct:   13 ILMIDNFDSFTWNLYQSLCLLGADVTVIRNDAIPRSAIPQLRIKRLIVSPGPGHPQTDSGISREAIKYFAGKVPIMGVCMGLECVVDVFGGQIAYAG-EIMHGKVSGIRHDARG 125          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_SERMA (Anthranilate synthase component II OS=Serratia marcescens GN=trpG PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 46/127 (36.22%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I+++DN DSFTYNL   +   G+   +YRN    E+ +E L+      +++SPGPGTP ++G   + +  L   +P+ G+C+G Q I EA+GG++ ++   ++HGK+S + +D    +G+ AG+ NP
Sbjct:    4 ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHD---GEGMFAGMANP 126          
The following BLAST results are available for this feature:
BLAST of FC932273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TRPG_NEUCR1.459e-2347.37Anthranilate synthase component 2 OS=Neurospora cr... [more]
TRPG_ASPNG4.246e-2348.25Anthranilate synthase component 2 OS=Aspergillus n... [more]
TRPG_SULSO7.242e-2350.47Anthranilate synthase component II OS=Sulfolobus s... [more]
TRPG_EMENI1.235e-2246.49Anthranilate synthase component 2 OS=Emericella ni... [more]
TRPG_YEAST1.613e-2244.74Anthranilate synthase component 2 OS=Saccharomyces... [more]
TRPG_MYCTU4.694e-2246.46Anthranilate synthase component 2 OS=Mycobacterium... [more]
TRPG_ASPAW6.131e-2246.22Anthranilate synthase component 2 OS=Aspergillus a... [more]
TRPG_LEPBI2.330e-2141.98Anthranilate synthase component II OS=Leptospira b... [more]
TRPG_PHACH3.720e-1942.98Anthranilate synthase component 2 OS=Phanerochaete... [more]
TRPG_SERMA1.082e-1836.22Anthranilate synthase component II OS=Serratia mar... [more]

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Properties
Property NameValue
Genbank descriptionC34206G05EF PostHarveN Citrus clementina cDNA clone C34206G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932273 ID=FC932273; Name=FC932273; organism=Citrus clementina; type=EST; length=694bp
GGCTCAGTTTTTTGTTGTCTTTGAAGTTAAAAAGCGCCTTAGTTTCATAT
TCTCAGTCTCGCTCTCTCCTCTCTAGCAACAATGGCGGCAATGGTTTCGC
AGTCAACTCTCATTCAAACAAAACCGTCTCTCTCTTTAAAACCCTCTCAA
CGGTTTCGACCCAATCGTCTCTCTGCAATCCCTGAGCCTTCTCCAGGGCT
GAGGTTGGGGGCTAAGAAGGGAAATGGGGCTGTAAAGTTGTCAATGGCTG
TGGCAGAGGCAGTACCCATTTCGAAGTCTTTATATTTGGATGATAAGAAG
AGCAAGAATAATAAAAATCCCATCATTGTTATTGATAATTATGATAGTTT
CACTTACAATCTCTGCCAGTATATGGGCGAGCTTGGTTATCACTTTGAGG
TTTATCGGAATGATGAATTAACTGTGGAGGAGTTAAAACGGAAAAATCCT
AGAGGAGTGCTTATATCCCCTGGGCCGGGCACACCTCAAGATTCTGGAAT
ATCATTGCAGACTGTTTTGGAACTTGGACCTACTGTGCCTCTGTTTGGTG
TTTGTATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAGATTGTG
CGTTCTCCGCTTGGTGTCATGCATGGAAAAAGTTCTCTTGTGTATTATGA
TGAGAAAGGGGAGGATGGCTTGCTTGCTGGACTATNCAATCCTT
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