FC932273

Overview
NameFC932273
Unique NameFC932273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14547 contig Ccv1_Contig14547:7..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_HAEIN (Anthranilate synthase component II OS=Haemophilus influenzae GN=trpG PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I+ +DN+DSFTYNL      LG++  +YRND   E  VE         + +SPGPGTP ++GI L  +  L   VP+ GVC+G Q + +AFGGK+V +   V+HGK S + +D    + +   L NP
Sbjct:    4 ILFLDNFDSFTYNLVDQFRVLGHNVTIYRNDCDLEKLVETALNTPDTILALSPGPGTPSEAGILLPLIERLKNQVPIIGVCLGHQALIQAFGGKVVHAG-EVLHGKVSRISHD---NEAMFKDLANP 126          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG2_HALMA (Anthranilate synthase component II OS=Haloarcula marismortui GN=trpG2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD 651
            I++IDNYDSF YNL QY+GE      V RND + VE +   +P G+++SPGPGTP ++G+S+    E     P  GVC+G Q +  A G  +  +P  V+HGK S V +D
Sbjct:    2 ILIIDNYDSFAYNLVQYVGEFD-DVTVRRNDAIDVEGIHELDPDGIVVSPGPGTPAEAGVSIDVFAE--TEYPALGVCLGHQALCAAHGTPVGHAP-SVVHGKPSEVRHD 107          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_CYACA (Anthranilate synthase component II OS=Cyanidium caldarium GN=trpG PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVY 645
            I++IDNYDSF+YNL Q +GE+     V R+DE+ V +L+  N + ++ISPGPG P +  I  Q V    P  P+ G+C+G Q I   +   I +S   V HG++S +Y
Sbjct:    2 ILIIDNYDSFSYNLVQSVGEINSDLIVLRSDEIDVSKLQNLNIKHIIISPGPGHPDEYTICKQVVKFFAPYTPILGICLGHQIIATCYNASIKKSS-PVFHGRASKIY 108          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_PYRKO (Anthranilate synthase component II OS=Pyrococcus kodakaraensis GN=trpG PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTP---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++++N DSF +NL +Y   L    +V  N  +TV EL+R +P GV+ISPGPG P   ++ G S + VLE G  VP+ GVC+G Q I  AFGGK+ R  +   HGK+S V +D K   G+L G+ NP
Sbjct:    2 IVLVNNRDSFVWNLAEY-ASLFDRVKVVPNT-ITVGELRRLDPDGVIISPGPGHPLERREVGNSPEIVLEAG--VPILGVCLGHQIIATAFGGKVGR--VKPRHGKASPVKHDGK---GVLRGIKNP 119          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_YERPE (Anthranilate synthase component II OS=Yersinia pestis GN=trpG PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 45/127 (35.43%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I+++DN DSFTYNL   +   G+   +YRN    +  +E L++     +++SPGPGTP  +G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++HGK+S + +D +   G+ AG+ NP
Sbjct:    4 ILLLDNIDSFTYNLVDQLRSSGHRVVIYRNHIAADNIIERLQQLEQPVLMLSPGPGTPAQAGCMPELLQRLQGQLPMIGICLGHQAIIEAYGGHVGQAG-EILHGKASAIEHDGQ---GMFAGMPNP 126          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG1_HALMA (Anthranilate synthase component II OS=Haloarcula marismortui GN=trpG1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 49/124 (39.52%), Postives = 79/124 (63.71%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQ---DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL 684
            ++ +DN+DSFTYNL +Y+ E     EV RN   ++++++  +P  +++SPGPG P+   D G++L  + E+ P VP  GVC+GL+    A+GG I R+P  + HGK+  + +D K   G+ AGL
Sbjct:   18 VLFVDNFDSFTYNLVEYVSEHA-ETEVVRNTA-SLDDVEAFDPDAIILSPGPGHPKNERDVGVTLDVLREVSPDVPTLGVCLGLESAVYAYGGTIGRAPEPI-HGKAFPIDHDGK---GVFAGL 135          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_CRYNE (Anthranilate synthase component 2 OS=Cryptococcus neoformans GN=TRP1 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  325 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRG----VLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            ++IDNYDSFT+N+   +  +G +  V RND++T++E++     G    ++ISPGPG P+ DSG+S   +      +P+ GVCMGL+CI +  GG+I  +   + HGK+SLV +D  G
Sbjct:    5 LLIDNYDSFTWNIYADLASVGGNPYVVRNDKITLKEIEGMFSDGELERIVISPGPGHPRTDSGVSRDVIAWGMGKLPILGVCMGLECIVDLLGGEIAYAG-EIKHGKTSLVQHDSIG 120          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_CRYNV (Anthranilate synthase component 2 OS=Cryptococcus neoformans var. grubii GN=TRP1 PE=4 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  325 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRG----VLISPGPGTPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 660
            ++IDNYDSFT+N+   +  +G +  V RND++T++E++     G    ++ISPGPG P+ DSG+S   +      +P+ GVCMGL+CI +  GG+I  +   + HGK+SLV +D  G
Sbjct:    5 LLIDNYDSFTWNIYADLASVGGNPFVVRNDKITLKEIEGMFADGELERIVISPGPGHPRTDSGVSRDVIAWGMGKLPILGVCMGLECIVDLLGGEIAYAG-EIKHGKTSLVQHDSIG 120          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_SHIDY (Anthranilate synthase component II (Fragment) OS=Shigella dysenteriae GN=trpG-TRPD PE=4 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 44/127 (34.65%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I+++DN DSFTYNL   +   G++  +YRN    +  +E L   +   +++SPGPG P ++G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++HGK+S + +D +    + AGL NP
Sbjct:    4 ILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLSGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHDGQ---AMFAGLTNP 126          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_ECOLI (Anthranilate synthase component II OS=Escherichia coli (strain K12) GN=trpD PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 44/127 (34.65%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I+++DN DSFTYNL   +   G++  +YRN    +  +E L   +   +++SPGPG P ++G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++HGK+S + +D +    + AGL NP
Sbjct:    4 ILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHDGQ---AMFAGLTNP 126          
The following BLAST results are available for this feature:
BLAST of FC932273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TRPG_HAEIN1.082e-1840.94Anthranilate synthase component II OS=Haemophilus ... [more]
TRPG2_HALMA1.082e-1844.55Anthranilate synthase component II OS=Haloarcula m... [more]
TRPG_CYACA2.411e-1841.67Anthranilate synthase component II OS=Cyanidium ca... [more]
TRPG_PYRKO2.666e-1745.67Anthranilate synthase component II OS=Pyrococcus k... [more]
TRPG_YERPE4.547e-1735.43Anthranilate synthase component II OS=Yersinia pes... [more]
TRPG1_HALMA4.547e-1739.52Anthranilate synthase component II OS=Haloarcula m... [more]
TRPG_CRYNE7.756e-1741.03Anthranilate synthase component 2 OS=Cryptococcus ... [more]
TRPG_CRYNV1.013e-1641.03Anthranilate synthase component 2 OS=Cryptococcus ... [more]
TRPG_SHIDY1.323e-1634.65Anthranilate synthase component II (Fragment) OS=S... [more]
TRPG_ECOLI2.257e-1634.65Anthranilate synthase component II OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC34206G05EF PostHarveN Citrus clementina cDNA clone C34206G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932273 ID=FC932273; Name=FC932273; organism=Citrus clementina; type=EST; length=694bp
GGCTCAGTTTTTTGTTGTCTTTGAAGTTAAAAAGCGCCTTAGTTTCATAT
TCTCAGTCTCGCTCTCTCCTCTCTAGCAACAATGGCGGCAATGGTTTCGC
AGTCAACTCTCATTCAAACAAAACCGTCTCTCTCTTTAAAACCCTCTCAA
CGGTTTCGACCCAATCGTCTCTCTGCAATCCCTGAGCCTTCTCCAGGGCT
GAGGTTGGGGGCTAAGAAGGGAAATGGGGCTGTAAAGTTGTCAATGGCTG
TGGCAGAGGCAGTACCCATTTCGAAGTCTTTATATTTGGATGATAAGAAG
AGCAAGAATAATAAAAATCCCATCATTGTTATTGATAATTATGATAGTTT
CACTTACAATCTCTGCCAGTATATGGGCGAGCTTGGTTATCACTTTGAGG
TTTATCGGAATGATGAATTAACTGTGGAGGAGTTAAAACGGAAAAATCCT
AGAGGAGTGCTTATATCCCCTGGGCCGGGCACACCTCAAGATTCTGGAAT
ATCATTGCAGACTGTTTTGGAACTTGGACCTACTGTGCCTCTGTTTGGTG
TTTGTATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAGATTGTG
CGTTCTCCGCTTGGTGTCATGCATGGAAAAAGTTCTCTTGTGTATTATGA
TGAGAAAGGGGAGGATGGCTTGCTTGCTGGACTATNCAATCCTT
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