FC932273

Overview
NameFC932273
Unique NameFC932273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14547 contig Ccv1_Contig14547:7..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_LACLA (Anthranilate synthase component II OS=Lactococcus lactis subsp. lactis GN=trpG PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 642
            I++IDNYDSFTYNL QY+G L     V +ND+ ++  +  K    ++ SPGPG P D+G     + +     P+ G+C+G Q I E FGGK+ R    VMHGK+S V
Sbjct:    2 ILIIDNYDSFTYNLVQYVGVLT-DVAVVKNDDDSLGNMAEKAD-ALIFSPGPGWPADAGKMETLIQQFAGQKPILGICLGFQAIVEVFGGKL-RLAHQVMHGKNSQV 105          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_HALVO (Anthranilate synthase component II OS=Halobacterium volcanii GN=trpG PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVY----RNDELTVEELKRKNPRGVLISPGPGTPQ---DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG-----EDGLLAG 681
            ++V+DN+DSFTYNL +Y  E     E      R    +++E++  +P  ++ISPGPG P+   D G++   + EL   +P  GVC+GL+    A+GG I  +P   +HGK+  V +D  G     EDG  AG
Sbjct:    4 LVVVDNFDSFTYNLVEYFSEQTVEGEPLDIEVRKTTASLDEIRDLDPDAIVISPGPGHPKNDRDVGVTNDVLTELSTEIPTLGVCLGLEAAVYAYGGTIGHAP-DAIHGKAFPVDHDGAGVFAGLEDGFPAG 134          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_VIBPA (Anthranilate synthase component II OS=Vibrio parahaemolyticus GN=trpG PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND------ELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE 654
            I+ IDN+DSFTYNL      LG+  ++YRN       E  + EL+  NP  VL+SPGPG P ++G   + +  +   VP+ G+C+G Q I EA+GG +  +   ++HGK S++ + +
Sbjct:    4 IVFIDNFDSFTYNLVDQFRSLGHSVKIYRNHIPAETIEQAINELE--NPV-VLLSPGPGAPSEAGSMPELIQRMKGKVPMIGICLGHQAIVEAYGGTVAGAG-EIIHGKVSMMEHQD 116          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_VIBCH (Anthranilate synthase component II OS=Vibrio cholerae GN=trpG PE=4 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRN----DELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I+ IDN+DSFTYNL      LG+   +YRN    D +    L+  NP  V++SPGPG P ++G   + +  L   VP+ G+C+G Q I EA+GG +V     ++HGK S++   E     +  GL +P
Sbjct:    4 ILFIDNFDSFTYNLVDQFRSLGHVVTIYRNNLSADAIEQALLQLDNPV-VVLSPGPGAPSETGCMPELLQRLKGKVPMIGICLGHQAIVEAYGG-VVAGAGEIIHGKVSMM---EHQNHAIYRGLPSP 126          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_METTH (Anthranilate synthase component II OS=Methanobacterium thermoautotrophicum GN=trpG PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGEL------GYHFEVYRNDELTVEELKRKNPRGVLISPGPGTP---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD 651
            I++IDNYDSFT+NL Q  GE+           V RNDE  + +L+  +P  ++ISPGPG P    D G+ +  + E     PL GVC+G Q I  AFGG++ +     +HGK   V++D
Sbjct:    4 ILIIDNYDSFTHNLYQLAGEILRDEGMDEEIMVLRNDEARISDLRALDPEKIIISPGPGNPSRRSDFGVCMDVIGEFTDR-PLLGVCLGHQGIFHAFGGRVDQGE--PVHGKIVEVFHD 119          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_HELPJ (Anthranilate synthase component II OS=Helicobacter pylori J99 GN=trpG PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND--ELTVEELKRKNPRGVL--ISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 642
            I  IDN+DSF+YNL   +  LGY   VY+ND     +  L  + P+  L  ISPGPG P  SG  L+ +       P+ GVC+GLQ + +++G KI+RS   ++HGK++ +
Sbjct:    3 IFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLMGLMNEEPKTPLLFISPGPGNPNSSGNLLKIIAMAKKKFPILGVCLGLQALAQSYGAKIIRSK-EIVHGKATTI 112          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_SALTY (Anthranilate synthase component II OS=Salmonella typhimurium GN=trpD PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 42/127 (33.07%), Postives = 75/127 (59.06%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I+++DN DSFT+NL   +   G++  +YRN    +  ++ L       +++SPGPG P ++G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++HGK+S + +D +    + AGL NP
Sbjct:    4 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHDGQ---AMFAGLANP 126          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_HELPY (Anthranilate synthase component II OS=Helicobacter pylori GN=trpG PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND-------ELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 642
            I  IDN+DSF+YNL   +  LGY   VY+ND       +L  EE K      + ISPGPG P  SG  L+ +       P+ G+C+GLQ + +++G KI+RS   ++HGK++ +
Sbjct:    3 IFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLMDLMNEESKTPL---LFISPGPGNPNSSGNLLKIIAMAKKKFPILGICLGLQALAQSYGAKIIRSK-EIVHGKATAI 112          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_METTM (Anthranilate synthase component II OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=trpG PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 52/132 (39.39%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFE-----VYRNDELTVEELKRKNPRGVLISPGPGTP---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLXNP 693
            I++IDNYDSFT+NL Q  GE+    +     V RNDE+ ++ ++  +P  ++ISPGPG P   +D GI  + + E     P+ GVC+G Q I   FGG +       +HGK S V++D  G + L  G+ NP
Sbjct:    5 ILIIDNYDSFTHNLYQMAGEIMMEMDSADIMVVRNDEVDIDYVRGLDPERIIISPGPGNPIKREDFGICSEVIGEFTDR-PILGVCLGHQGIFHYFGGVVGYGE--PVHGKISEVFHD--GSE-LFRGVPNP 130          
BLAST of FC932273 vs. ExPASy Swiss-Prot
Match: TRPG_CORGL (Anthranilate synthase component 2 OS=Corynebacterium glutamicum GN=trpG PE=4 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  322 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKS-SLVYYDEKGEDGLLAGL 684
            +++IDN+DSF YNL       GY   V+RN  + VE +   NP  + +SPGPG P D+G  +  +      +PL G+C+G Q + E  GGK+   P G +HG + +++  D   +  + AGL
Sbjct:    4 VVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVETILAANPDLICLSPGPGYPADAGNMMALIERTLGQIPLLGICLGYQALIEYHGGKV--EPCGPVHGTTDNMILTDAGVQSPVFAGL 122          
The following BLAST results are available for this feature:
BLAST of FC932273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TRPG_LACLA3.849e-1643.93Anthranilate synthase component II OS=Lactococcus ... [more]
TRPG_HALVO5.027e-1637.12Anthranilate synthase component II OS=Halobacteriu... [more]
TRPG_VIBPA1.463e-1538.46Anthranilate synthase component II OS=Vibrio parah... [more]
TRPG_VIBCH1.910e-1538.28Anthranilate synthase component II OS=Vibrio chole... [more]
TRPG_METTH1.910e-1540.34Anthranilate synthase component II OS=Methanobacte... [more]
TRPG_HELPJ2.495e-1540.54Anthranilate synthase component II OS=Helicobacter... [more]
TRPG_SALTY3.259e-1533.07Anthranilate synthase component II OS=Salmonella t... [more]
TRPG_HELPY3.259e-1539.47Anthranilate synthase component II OS=Helicobacter... [more]
TRPG_METTM4.256e-1539.39Anthranilate synthase component II OS=Methanobacte... [more]
TRPG_CORGL4.256e-1536.07Anthranilate synthase component 2 OS=Corynebacteri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206G05EF PostHarveN Citrus clementina cDNA clone C34206G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932273 ID=FC932273; Name=FC932273; organism=Citrus clementina; type=EST; length=694bp
GGCTCAGTTTTTTGTTGTCTTTGAAGTTAAAAAGCGCCTTAGTTTCATAT
TCTCAGTCTCGCTCTCTCCTCTCTAGCAACAATGGCGGCAATGGTTTCGC
AGTCAACTCTCATTCAAACAAAACCGTCTCTCTCTTTAAAACCCTCTCAA
CGGTTTCGACCCAATCGTCTCTCTGCAATCCCTGAGCCTTCTCCAGGGCT
GAGGTTGGGGGCTAAGAAGGGAAATGGGGCTGTAAAGTTGTCAATGGCTG
TGGCAGAGGCAGTACCCATTTCGAAGTCTTTATATTTGGATGATAAGAAG
AGCAAGAATAATAAAAATCCCATCATTGTTATTGATAATTATGATAGTTT
CACTTACAATCTCTGCCAGTATATGGGCGAGCTTGGTTATCACTTTGAGG
TTTATCGGAATGATGAATTAACTGTGGAGGAGTTAAAACGGAAAAATCCT
AGAGGAGTGCTTATATCCCCTGGGCCGGGCACACCTCAAGATTCTGGAAT
ATCATTGCAGACTGTTTTGGAACTTGGACCTACTGTGCCTCTGTTTGGTG
TTTGTATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAGATTGTG
CGTTCTCCGCTTGGTGTCATGCATGGAAAAAGTTCTCTTGTGTATTATGA
TGAGAAAGGGGAGGATGGCTTGCTTGCTGGACTATNCAATCCTT
back to top